Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AB8613_RS01710 Genome accession   NZ_CP167894
Coordinates   388948..390129 (+) Length   393 a.a.
NCBI ID   WP_372384314.1    Uniprot ID   -
Organism   Vibrio sp. BS-M-Sm-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 383948..395129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8613_RS01690 (AB8613_01690) - 384634..385365 (-) 732 WP_274138056.1 SDR family oxidoreductase -
  AB8613_RS01695 (AB8613_01695) - 385494..386258 (+) 765 WP_327783932.1 helix-turn-helix transcriptional regulator -
  AB8613_RS01700 (AB8613_01700) - 386301..387194 (-) 894 WP_239717910.1 EamA family transporter -
  AB8613_RS01705 (AB8613_01705) - 387298..388680 (+) 1383 WP_372384313.1 PLP-dependent aminotransferase family protein -
  AB8613_RS01710 (AB8613_01710) cqsA 388948..390129 (+) 1182 WP_372384314.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AB8613_RS01715 (AB8613_01715) - 390282..392330 (-) 2049 WP_372384315.1 response regulator -
  AB8613_RS01720 (AB8613_01720) - 392588..393403 (-) 816 WP_372384316.1 TauD/TfdA dioxygenase family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43947.13 Da        Isoelectric Point: 6.8935

>NTDB_id=1040102 AB8613_RS01710 WP_372384314.1 388948..390129(+) (cqsA) [Vibrio sp. BS-M-Sm-2]
MSDKTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNAVVMQSNDYLALSHNKQIQHAHQAAICEHDDNVVMS
AIFLQDDQSKPAFETKLANYVGMESCLLSQSGWAANIGLLQTICPPDTPVYIDFFAHMSLWEGIRAAGATAYPFMHNNMS
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVIVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSRTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGAEDKRKALFERAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEQRDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHSELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1040102 AB8613_RS01710 WP_372384314.1 388948..390129(+) (cqsA) [Vibrio sp. BS-M-Sm-2]
ATGAGTGATAAAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAGCGCTTGAACTTCTACATTCAAGACCTGATTAC
CCAGAACCAAAGCCAAAAGCACTTAGTATTGGGTAAACGCCCCCAGCGCAATGCCGTTGTGATGCAGAGCAATGATTACT
TAGCCCTGTCACACAACAAACAGATCCAACACGCCCATCAAGCGGCGATCTGTGAGCACGATGACAATGTGGTGATGTCT
GCCATTTTCTTACAAGATGATCAGTCTAAACCCGCATTTGAAACCAAACTCGCTAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAATCAGGCTGGGCGGCCAATATTGGGTTACTTCAAACTATCTGTCCGCCAGATACGCCGGTGTATATCGACT
TTTTTGCACACATGTCGCTATGGGAAGGTATTCGCGCTGCTGGTGCAACCGCCTATCCATTTATGCATAACAATATGAGT
CACTTACGTAAGCAACTAGAACGTCATGGCTCTGGTGTGATTGTAGTCGACTCGGTCTACAGCACGATTGGCACCATTGC
TCCGTTACGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCCGTCATCGTTGATGAATCGCATTCACTGGGAACAC
ATGGGGAAAATGGTGCAGGCTTAGTTCAAGCGTTAGGGCTCACCAACCAAGTCGACTTCATCACCGTTAGCTTGGCAAAA
ACCTTTGCTTATCGTGCAGGTGCAATCCTTGGCCCTAAACAACTATCTAGAACCTTGCCGTTTGTCGCATACCCTGCGAT
TTTTAGCTCAACCGTGTTGCCGCAAGAAGTGATTCGTTTAGAGAAAACCTTGGAGGTAATTAAAGGTGCAGAAGATAAAC
GAAAAGCATTATTTGAACGCGCTAAATCGCTCACCACAGGCCTCAAGCGGATTGGCTTTAACATCCGTAGCGAATCTCAA
ATCGTTGCGTTAGAGTGCGGCAATGAGAGAAATACAGAGCGAGTGCGCGACTTCCTTGAGCAGCGTGATGTGTTCGGTGC
TGTGTTCTGCCGCCCCGCTACGGGCAAGAATAAGAACATCATCCGATTTTCAGTGAATGCCGACATGACACCACGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCATTCGGAATTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.072

98.473

0.552

Multiple sequence alignment