Detailed information NTG1040101

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: AB8613_RS01645
• Genome accession: NZ_CP167894
• Coordinates: 375699..377123 (+)
• Length: 474 a.a.
• NCBI ID: WP_372384312.1
• Uniprot ID: -
• Organism: Vibrio sp. BS-M-Sm-2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 370699..382123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8613_RS01630 (AB8613_01630)	-	373056..373766 (-)	711	WP_017090896.1	molecular chaperone	-
AB8613_RS01635 (AB8613_01635)	-	373763..374200 (-)	438	WP_372384311.1	DUF4402 domain-containing protein	-
AB8613_RS01640 (AB8613_01640)	-	374253..374687 (-)	435	WP_048611824.1	DUF4402 domain-containing protein	-
AB8613_RS01645 (AB8613_01645)	sbcB	375699..377123 (+)	1425	WP_372384312.1	exodeoxyribonuclease I	Machinery gene
AB8613_RS01650 (AB8613_01650)	-	377149..377520 (+)	372	WP_004734867.1	CidA/LrgA family protein	-
AB8613_RS01655 (AB8613_01655)	-	377523..378200 (+)	678	WP_004734865.1	LrgB family protein	-
AB8613_RS01660 (AB8613_01660)	cdd	378558..379445 (+)	888	WP_065676922.1	cytidine deaminase	-
AB8613_RS01665 (AB8613_01665)	purT	379613..380788 (+)	1176	WP_146491238.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
AB8613_RS01670 (AB8613_01670)	-	380905..381558 (-)	654	WP_146491239.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54602.82 Da
• Isoelectric Point: 4.8594

>NTDB_id=1040101 AB8613_RS01645 WP_372384312.1 375699..377123(+) (sbcB) [Vibrio sp. BS-M-Sm-2]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGINWPPNEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1040101 AB8613_RS01645 WP_372384312.1 375699..377123(+) (sbcB) [Vibrio sp. BS-M-Sm-2]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTTGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCTGCGTTGATCACCCGTATCACACCACAGAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCTGAGTTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAGGTAACGCGTTACACTTGTTACCGAAACTTCATCGACCCGTATGCGTGGAGCTGGCAGAACGGTAACTCACGTTGGG
ATCTACTCGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGATGGTATCAACTGGCCACCAAATGAAGAAGGTTACCCA
AGTTTCAAACTGGAACATCTATCGGTGGCAAACGGTATTGAACATGAGAACGCGCACGATGCGATGGCAGATGTTATTGC
GACCATCGAACTGGCTAAGAAGTTAAAGGCCGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCGCCAGCCAAAACACTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTAAAGAACCTAGCACTGCTTCGTGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTCTACTCGCAAGAGCGTGAGTACGAGAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCAATGAACATCATTCGCGAAACTGACCCAAATAACTTAGCAGCTTTGGATATCACCTTCAGTGACGAA
CGTATTAAACCGCTACTGTTCCGTTACCGTGCTCGAAATTTCCCATGGACGCTCGACGAAGCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAATTTTATGAGAGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.949	100	0.759