Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACDK45_RS01335 Genome accession   NZ_CP167879
Coordinates   253620..254273 (-) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NTHi52     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 248620..259273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDK45_RS01335 (ACDK45_01335) sxy/tfoX 253620..254273 (-) 654 WP_005692773.1 DNA transformation protein TfoX Regulator
  ACDK45_RS01340 (ACDK45_01340) recA 254645..255710 (+) 1066 Protein_256 recombinase RecA -
  ACDK45_RS01345 (ACDK45_01345) recX 255789..256247 (+) 459 WP_044364687.1 recombination regulator RecX -
  ACDK45_RS01350 (ACDK45_01350) crcB 256256..256630 (-) 375 WP_044364686.1 fluoride efflux transporter CrcB -
  ACDK45_RS01355 (ACDK45_01355) - 256630..257448 (-) 819 WP_044364684.1 Cof-type HAD-IIB family hydrolase -
  ACDK45_RS01360 (ACDK45_01360) - 257852..258856 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=1040079 ACDK45_RS01335 WP_005692773.1 253620..254273(-) (sxy/tfoX) [Haemophilus influenzae strain NTHi52]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1040079 ACDK45_RS01335 WP_005692773.1 253620..254273(-) (sxy/tfoX) [Haemophilus influenzae strain NTHi52]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment