Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KJP64_RS06705 Genome accession   NZ_OX419565
Coordinates   1287212..1288348 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6145     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282212..1293348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP64_RS06685 (NRS6145_06610) uxaA 1282663..1284156 (+) 1494 WP_019712454.1 altronate dehydratase family protein -
  KJP64_RS06690 (NRS6145_06615) yjnA 1284195..1284959 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  KJP64_RS06695 (NRS6145_06620) yjoA 1285183..1285647 (-) 465 WP_014479541.1 DinB family protein -
  KJP64_RS06700 (NRS6145_06625) yjoB 1285796..1287067 (+) 1272 WP_003245490.1 ATPase YjoB -
  KJP64_RS06705 (NRS6145_06630) rapC 1287212..1288348 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  KJP64_RS06710 (NRS6145_06635) phrA 1288338..1288472 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  KJP64_RS06715 (NRS6145_06640) yjpA 1288503..1288760 (-) 258 WP_003232731.1 YciI family protein -
  KJP64_RS06720 (NRS6145_06645) xlyB 1288880..1289833 (+) 954 WP_032721375.1 N-acetylmuramoyl-L-alanine amidase -
  KJP64_RS06725 (NRS6145_06650) yjqA 1289873..1290250 (-) 378 WP_014476529.1 PH domain-containing protein -
  KJP64_RS06730 (NRS6145_06655) pghB 1290355..1290957 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  KJP64_RS06735 (NRS6145_06660) xpdC 1291034..1291870 (+) 837 WP_003245071.1 manganese catalase family protein -
  KJP64_RS06740 (NRS6145_06665) xkdA 1291906..1292502 (-) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  KJP64_RS06745 (NRS6145_06670) xre 1292665..1293006 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=1039963 KJP64_RS06705 WP_015252291.1 1287212..1288348(+) (rapC) [Bacillus subtilis isolate NRS6145]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1039963 KJP64_RS06705 WP_015252291.1 1287212..1288348(+) (rapC) [Bacillus subtilis isolate NRS6145]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418