Detailed information NTG0103993

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: QUE64_RS02920
• Genome accession: NZ_AP028138
• Coordinates: 561007..562368 (+)
• Length: 453 a.a.
• NCBI ID: WP_286225835.1
• Uniprot ID: -
• Organism: Polynucleobacter sp. HIN7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 556007..567368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUE64_RS02910 (PHIN7_05610)	-	558670..560511 (+)	1842	WP_286224715.1	potassium transporter Kup	-
QUE64_RS02915 (PHIN7_05620)	-	560511..561005 (+)	495	WP_286224317.1	hypothetical protein	-
QUE64_RS02920 (PHIN7_05630)	radA	561007..562368 (+)	1362	WP_286225835.1	DNA repair protein RadA	Machinery gene
QUE64_RS02925 (PHIN7_05640)	prmB	562375..563244 (-)	870	WP_286225836.1	50S ribosomal protein L3 N(5)-glutamine methyltransferase	-
QUE64_RS02930 (PHIN7_05650)	dapE	563306..564454 (-)	1149	WP_286225837.1	succinyl-diaminopimelate desuccinylase	-
QUE64_RS02935 (PHIN7_05660)	dapD	564458..565285 (-)	828	WP_286225838.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48323.08 Da
• Isoelectric Point: 7.1829

>NTDB_id=103993 QUE64_RS02920 WP_286225835.1 561007..562368(+) (radA) [Polynucleobacter sp. HIN7]
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGITELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSMQGIDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSVPGSVAQVRECAAQLTRLAKSSGICVLLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKSKITDLQMIAVERIDEAIAAINDLY

Nucleotide

• Length: 1362 bp

>NTDB_id=103993 QUE64_RS02920 WP_286225835.1 561007..562368(+) (radA) [Polynucleobacter sp. HIN7]
ATGGCAAAGACCAAAACCCTCTATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCTGAGACCGCCAACCATCGTTTTCAGGGATTGGCCAAGTCAATCCCGC
GACAAAAATTAGTGAGCATTGAAGCACAGGATTCGCCTCGTTTGCCCACAGGAATTACGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTAGCCGGTGGAGTAGTTTTGCTCGGCGGTGATCCTGGAATTGGTAAATCCACCTTGCTATTGCAAGCCCT
CGCTGAGCTCAGTATGCAAGGGATTGATGTTTTATATAGCTCCGGAGAGGAGTCTGCTGCTCAAATTGCCTTGCGAGCTC
AACGTATTTCTTTAAATGCACCTCAGCTTGAAATCTTGGCAGAGATTCAGTTAGAAAAGTTATTGCTATCGGTTGAAGCT
GCGCAGCCGCAGGTATTGGTGGTTGATTCTATCCAAACTTTATATTCCGAGGCATTCACATCCGTACCTGGATCAGTCGC
TCAGGTGCGTGAGTGCGCCGCCCAGTTAACACGTCTCGCAAAGTCAAGTGGCATCTGTGTTTTATTGGTTGGTCACGTGA
CCAAGGATGGTCATCTAGCTGGTCCACGCGTACTTGAACATATTGTCGATACGGTTTTGTATTTCGAGGGCGATACCCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGGGCGGTCAATGAGCTCGGCGTCTTTGCGATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACGGTGCCCGGCTCCTGTGTATTGG
TAACGCAGGAGGGGAGTCGGCCACTGTTGGTTGAGATTCAGGCGCTGGTTGATACGGCGCATATTCCTAATCCTAGACGC
CTAGCGGTTGGCTTAGAACAGGCGCGTTTGGCCATGCTGTTAGCGGTCTTGCACCGTCATGCTGGAATCGCTTGCTTTGA
TCAGGATGTGTTCCTAAATGCAGTGGGTGGTGTCAAAATTACCGAACCAGCTGCCGATCTTGCGGTTTTGCTTGCGATCA
CATCATCAATTCGTAATCGTGCTCTACCAAAACATTTGGTGGTATTTGGTGAGGTTGGCTTGGCTGGAGAAATTCGCCCA
TGTCCGCGCGGTCAGGAGAGACTCAAGGAGGCCGCTAAATTGGGATTCAAGATTGCAATAATTCCAAAGGCTAATTTGCC
AAAATCCAAAATTACCGATTTACAAATGATCGCAGTTGAGCGGATTGATGAGGCCATCGCTGCTATCAACGACCTGTATT
AG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (62-217)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (358-447)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.231	100	0.494
radA	Streptococcus mitis SK321	46.035	100	0.461
radA	Streptococcus mitis NCTC 12261	45.833	100	0.461
radA	Streptococcus pneumoniae TIGR4	45.796	99.779	0.457
radA	Streptococcus pneumoniae D39	45.796	99.779	0.457
radA	Streptococcus pneumoniae Rx1	45.796	99.779	0.457
radA	Streptococcus pneumoniae R6	45.796	99.779	0.457