Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | QUE66_RS02745 | Genome accession | NZ_AP028137 |
| Coordinates | 533970..535331 (+) | Length | 453 a.a. |
| NCBI ID | WP_286224318.1 | Uniprot ID | - |
| Organism | Polynucleobacter sp. HIN6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 528970..540331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE66_RS02735 (PHIN6_05250) | - | 531633..533474 (+) | 1842 | WP_286224715.1 | potassium transporter Kup | - |
| QUE66_RS02740 (PHIN6_05260) | - | 533474..533968 (+) | 495 | WP_286224317.1 | hypothetical protein | - |
| QUE66_RS02745 (PHIN6_05270) | radA | 533970..535331 (+) | 1362 | WP_286224318.1 | DNA repair protein RadA | Machinery gene |
| QUE66_RS02750 (PHIN6_05280) | prmB | 535338..536243 (-) | 906 | WP_286224319.1 | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | - |
| QUE66_RS02755 (PHIN6_05290) | dapE | 536269..537417 (-) | 1149 | WP_286224320.1 | succinyl-diaminopimelate desuccinylase | - |
| QUE66_RS02760 (PHIN6_05300) | dapD | 537421..538248 (-) | 828 | WP_286224321.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | - |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 48265.00 Da Isoelectric Point: 7.1829
>NTDB_id=103982 QUE66_RS02745 WP_286224318.1 533970..535331(+) (radA) [Polynucleobacter sp. HIN6]
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGITELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSMQGVDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICVLLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKTKIADLQMIAVERIDEAIAAINDLY
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIEAQDSPRLPTGITELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSMQGVDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICVLLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKTKIADLQMIAVERIDEAIAAINDLY
Nucleotide
Download Length: 1362 bp
>NTDB_id=103982 QUE66_RS02745 WP_286224318.1 533970..535331(+) (radA) [Polynucleobacter sp. HIN6]
ATGGCAAAGACCAAAACCCTCTATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCTGAGACCGCCAACCATCGTTTTCAGGGATTGGCCAAGTCAATCCCGC
GACAAAAATTAGTGAGCATTGAAGCGCAGGATTCGCCTCGTTTGCCCACAGGAATTACGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTAGCCGGTGGAGTAGTTTTGCTCGGCGGTGATCCTGGAATTGGTAAATCCACCTTGCTATTGCAAGCCCT
CGCTGAGCTCAGTATGCAAGGAGTTGATGTTTTATATAGCTCCGGAGAGGAGTCTGCTGCTCAAATTGCCTTGCGTGCTC
AACGTATTTCTTTAAATGCACCTCAGCTTGAAATCTTGGCAGAGATTCAGTTAGAAAAATTATTGCTATCGGTTGAAGCT
GCGCAGCCGCAGGTATTGGTAGTTGATTCCATCCAGACTTTGTATTCCGAGGCATTTACATCGGCGCCTGGATCAGTCGC
TCAGGTGCGTGAGTGCGCCGCCCAGTTAACACGTCTCGCAAAGTCAAGTGGCATCTGTGTTTTATTAGTTGGCCATGTGA
CTAAAGATGGTCATTTGGCTGGCCCACGCGTACTTGAGCACATTGTCGATACCGTTTTATATTTTGAGGGCGATACGCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGGGCGGTCAATGAGCTCGGCGTCTTTGCGATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACGGTGCCTGGCTCCTGTGTATTGG
TAACGCAGGAGGGGAGTCGGCCACTGTTGGTTGAGATTCAGGCGCTGGTTGATACGGCGCATATTCCTAATCCTAGACGC
CTAGCGGTTGGCTTAGAACAGGCGCGTTTGGCCATGCTGTTAGCGGTCTTGCACCGTCATGCTGGAATCGCTTGCTTTGA
TCAGGATGTGTTCCTAAATGCAGTGGGTGGTGTCAAAATTACCGAACCAGCTGCCGATCTTGCGGTTTTGCTTGCGATCA
CATCATCAATTCGTAATCGTGCTCTACCAAAACATTTGGTGGTATTTGGTGAGGTTGGCTTGGCTGGAGAAATTCGCCCA
TGTCCGCGCGGTCAGGAGAGACTCAAGGAGGCCGCTAAATTGGGATTCAAGATTGCAATTATTCCAAAGGCTAATTTGCC
AAAAACAAAAATTGCTGACTTACAAATGATTGCAGTCGAGCGAATTGATGAGGCGATTGCTGCTATCAACGATTTGTATT
AG
ATGGCAAAGACCAAAACCCTCTATGTTTGCCAAGCGTGTGGAGGCAGTTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCTGAGACCGCCAACCATCGTTTTCAGGGATTGGCCAAGTCAATCCCGC
GACAAAAATTAGTGAGCATTGAAGCGCAGGATTCGCCTCGTTTGCCCACAGGAATTACGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTAGCCGGTGGAGTAGTTTTGCTCGGCGGTGATCCTGGAATTGGTAAATCCACCTTGCTATTGCAAGCCCT
CGCTGAGCTCAGTATGCAAGGAGTTGATGTTTTATATAGCTCCGGAGAGGAGTCTGCTGCTCAAATTGCCTTGCGTGCTC
AACGTATTTCTTTAAATGCACCTCAGCTTGAAATCTTGGCAGAGATTCAGTTAGAAAAATTATTGCTATCGGTTGAAGCT
GCGCAGCCGCAGGTATTGGTAGTTGATTCCATCCAGACTTTGTATTCCGAGGCATTTACATCGGCGCCTGGATCAGTCGC
TCAGGTGCGTGAGTGCGCCGCCCAGTTAACACGTCTCGCAAAGTCAAGTGGCATCTGTGTTTTATTAGTTGGCCATGTGA
CTAAAGATGGTCATTTGGCTGGCCCACGCGTACTTGAGCACATTGTCGATACCGTTTTATATTTTGAGGGCGATACGCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGCTTTGGGGCGGTCAATGAGCTCGGCGTCTTTGCGATGACCGAGAA
AGGTCTCAAGGGTGTCAACAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACGGTGCCTGGCTCCTGTGTATTGG
TAACGCAGGAGGGGAGTCGGCCACTGTTGGTTGAGATTCAGGCGCTGGTTGATACGGCGCATATTCCTAATCCTAGACGC
CTAGCGGTTGGCTTAGAACAGGCGCGTTTGGCCATGCTGTTAGCGGTCTTGCACCGTCATGCTGGAATCGCTTGCTTTGA
TCAGGATGTGTTCCTAAATGCAGTGGGTGGTGTCAAAATTACCGAACCAGCTGCCGATCTTGCGGTTTTGCTTGCGATCA
CATCATCAATTCGTAATCGTGCTCTACCAAAACATTTGGTGGTATTTGGTGAGGTTGGCTTGGCTGGAGAAATTCGCCCA
TGTCCGCGCGGTCAGGAGAGACTCAAGGAGGCCGCTAAATTGGGATTCAAGATTGCAATTATTCCAAAGGCTAATTTGCC
AAAAACAAAAATTGCTGACTTACAAATGATTGCAGTCGAGCGAATTGATGAGGCGATTGCTGCTATCAACGATTTGTATT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
49.67 |
100 |
0.499 |
| radA | Streptococcus mitis NCTC 12261 |
45.796 |
99.779 |
0.457 |
| radA | Streptococcus mitis SK321 |
45.796 |
99.779 |
0.457 |
| radA | Streptococcus pneumoniae TIGR4 |
45.575 |
99.779 |
0.455 |
| radA | Streptococcus pneumoniae R6 |
45.575 |
99.779 |
0.455 |
| radA | Streptococcus pneumoniae Rx1 |
45.575 |
99.779 |
0.455 |
| radA | Streptococcus pneumoniae D39 |
45.575 |
99.779 |
0.455 |