Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QUE61_RS03060 Genome accession   NZ_AP028136
Coordinates   580766..582127 (+) Length   453 a.a.
NCBI ID   WP_286307546.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575766..587127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE61_RS03035 (PHIN5_05900) - 576379..577230 (-) 852 WP_286307541.1 hypothetical protein -
  QUE61_RS03040 (PHIN5_05910) - 577227..577907 (-) 681 WP_286307542.1 hypothetical protein -
  QUE61_RS03050 (PHIN5_05920) - 578429..580270 (+) 1842 WP_286308257.1 potassium transporter Kup -
  QUE61_RS03055 (PHIN5_05930) - 580270..580764 (+) 495 WP_286307545.1 hypothetical protein -
  QUE61_RS03060 (PHIN5_05940) radA 580766..582127 (+) 1362 WP_286307546.1 DNA repair protein RadA Machinery gene
  QUE61_RS03065 (PHIN5_05950) prmB 582134..583006 (-) 873 WP_286307549.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  QUE61_RS03070 (PHIN5_05960) dapE 583065..584213 (-) 1149 WP_286307550.1 succinyl-diaminopimelate desuccinylase -
  QUE61_RS03075 (PHIN5_05970) dapD 584217..585044 (-) 828 WP_286307551.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48234.97 Da        Isoelectric Point: 7.1831

>NTDB_id=103970 QUE61_RS03060 WP_286307546.1 580766..582127(+) (radA) [Polynucleobacter sp. HIN5]
MAKTKTLYVCQACGGSSPKWQGQCPACDAWNTLEESLAETANHRFQGLAKSIPRQKLVSIDAQDSPRLPTGITELDRVLG
GGLVAGGVVLLGGDPGIGKSTLLLQALAELSMQGIDVLYSSGEESAAQIALRAQRISLNAPQLEILAEIQLEKLLLSVEA
AQPQVLVVDSIQTLYSEAFTSAPGSVAQVRECAAQLTRLAKSSGICILLVGHVTKDGHLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRSIKNRFGAVNELGVFAMTEKGLKGVNNPSALFLSQHPQTVPGSCVLVTQEGSRPLLVEIQALVDTAHIPNPRR
LAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAITSSIRNRALPKHLVVFGEVGLAGEIRP
CPRGQERLKEAAKLGFKIAIIPKANLPKSKIADLQMIAVERIDEAIAAVNDLF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=103970 QUE61_RS03060 WP_286307546.1 580766..582127(+) (radA) [Polynucleobacter sp. HIN5]
ATGGCGAAGACCAAAACCCTCTATGTTTGCCAAGCGTGTGGAGGTAGCTCTCCTAAATGGCAGGGCCAATGTCCTGCATG
CGATGCATGGAACACGCTTGAAGAGTCTTTGGCTGAGACCGCCAACCATCGTTTTCAGGGATTGGCCAAGTCAATCCCGC
GACAAAAATTAGTGAGCATTGATGCGCAGGATTCGCCTCGTTTGCCCACAGGAATTACGGAGCTCGATCGCGTGCTGGGT
GGGGGATTGGTGGCGGGCGGTGTGGTCTTGCTCGGCGGTGATCCTGGGATTGGTAAGTCCACCTTATTATTACAAGCCCT
CGCTGAGCTGAGTATGCAAGGGATTGATGTTTTATATAGCTCCGGGGAGGAGTCCGCCGCTCAAATTGCATTGCGTGCTC
AGCGAATTTCTTTAAATGCGCCTCAACTTGAAATCTTGGCAGAGATTCAGTTAGAAAAGTTATTGCTATCGGTTGAGGCT
GCGCAGCCGCAGGTATTGGTGGTTGATTCTATCCAAACTTTATATTCCGAGGCATTCACATCCGCACCTGGATCAGTCGC
TCAGGTGCGTGAGTGCGCCGCCCAGTTAACACGTCTCGCAAAGTCAAGTGGCATCTGTATTTTATTGGTTGGTCACGTGA
CCAAGGATGGTCATCTAGCTGGTCCACGCGTACTTGAACATATTGTCGATACGGTTTTGTATTTCGAGGGCGATACCCAT
TCGTCATTTCGCTTAGTGCGCTCGATTAAAAACCGTTTTGGCGCAGTTAACGAGCTTGGCGTTTTTGCAATGACTGAGAA
AGGTCTCAAGGGTGTCAATAATCCGTCCGCTCTTTTTCTATCGCAACATCCGCAAACGGTGCCTGGCTCCTGTGTATTGG
TAACGCAGGAGGGGAGTCGGCCGCTATTGGTTGAGATTCAGGCACTGGTTGATACGGCGCATATCCCTAACCCCAGGCGC
TTAGCAGTCGGTTTAGAACAGGCGCGTTTGGCGATGTTATTAGCCGTCTTGCACCGTCATGCTGGAATCGCTTGCTTTGA
TCAAGATGTTTTCCTCAACGCAGTGGGTGGGGTCAAAATTACCGAGCCCGCCGCTGACCTTGCTGTTCTCCTTGCCATCA
CATCCTCAATCCGCAATCGCGCCCTACCAAAACATTTGGTGGTATTTGGTGAGGTTGGTTTGGCCGGAGAAATTCGCCCA
TGCCCGCGAGGTCAGGAGAGACTCAAGGAAGCTGCCAAATTAGGATTTAAGATCGCGATCATTCCAAAGGCTAATTTGCC
AAAATCAAAAATTGCTGATTTACAAATGATTGCAGTCGAGCGAATTGATGAGGCGATTGCTGCTGTCAACGACCTGTTCT
AG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-447)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

100

0.497
  radA Streptococcus mitis NCTC 12261

46.053

100

0.464
  radA Streptococcus pneumoniae D39

46.018

99.779

0.459
  radA Streptococcus pneumoniae TIGR4

46.018

99.779

0.459
  radA Streptococcus mitis SK321

46.018

99.779

0.459
  radA Streptococcus pneumoniae R6

46.018

99.779

0.459
  radA Streptococcus pneumoniae Rx1

46.018

99.779

0.459

Multiple sequence alignment