Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KJP66_RS02795 Genome accession   NZ_OX419563
Coordinates   528294..528728 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis isolate NRS6153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 523294..533728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP66_RS02765 (NRS6153_02760) ydaD 523944..524804 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  KJP66_RS02770 (NRS6153_02765) lyxE 524820..525323 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  KJP66_RS02775 (NRS6153_02770) ydaF 525409..525960 (+) 552 WP_003246691.1 GNAT family protein -
  KJP66_RS02780 (NRS6153_02775) ydaG 526038..526460 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  KJP66_RS02785 (NRS6153_02785) amj 526966..527775 (+) 810 WP_003234394.1 lipid II flippase Amj -
  KJP66_RS02790 (NRS6153_02790) ydzA 527819..528109 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  KJP66_RS02795 (NRS6153_02795) lrpC 528294..528728 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  KJP66_RS02800 (NRS6153_02800) topB 528793..530976 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  KJP66_RS02805 (NRS6153_02805) epsJ 531179..532267 (+) 1089 WP_003246551.1 lipoprotein -
  KJP66_RS02810 (NRS6153_02810) epsK 532248..533099 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=1039620 KJP66_RS02795 WP_003246585.1 528294..528728(+) (lrpC) [Bacillus subtilis isolate NRS6153]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1039620 KJP66_RS02795 WP_003246585.1 528294..528728(+) (lrpC) [Bacillus subtilis isolate NRS6153]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1