Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACCO40_RS13855 Genome accession   NZ_CP167793
Coordinates   2693820..2694566 (-) Length   248 a.a.
NCBI ID   WP_061186692.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2688820..2699566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS13830 (ACCO40_13830) mreC 2689227..2690099 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACCO40_RS13835 (ACCO40_13835) mreB 2690130..2691143 (-) 1014 WP_014114656.1 cell shape-determining protein MreB -
  ACCO40_RS13840 (ACCO40_13840) radC 2691235..2691930 (-) 696 WP_041521028.1 DNA repair protein RadC -
  ACCO40_RS13845 (ACCO40_13845) - 2691967..2692536 (-) 570 WP_014114658.1 Maf family nucleotide pyrophosphatase -
  ACCO40_RS13850 (ACCO40_13850) spoIIB 2692688..2693686 (-) 999 WP_372401766.1 stage II sporulation protein SpoIIB -
  ACCO40_RS13855 (ACCO40_13855) comC 2693820..2694566 (-) 747 WP_061186692.1 A24 family peptidase Machinery gene
  ACCO40_RS13860 (ACCO40_13860) - 2694703..2695995 (-) 1293 WP_014114662.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACCO40_RS13865 (ACCO40_13865) valS 2696055..2698697 (-) 2643 WP_372402797.1 valine--tRNA ligase -
  ACCO40_RS13870 (ACCO40_13870) - 2699145..2699336 (+) 192 WP_010330262.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26484.14 Da        Isoelectric Point: 9.9495

>NTDB_id=1039437 ACCO40_RS13855 WP_061186692.1 2693820..2694566(-) (comC) [Bacillus spizizenii strain SHT-15]
MLPILFLLGLILGSFYYTAGCRIPLHISIITPRSACSFCRRTLTAAELIPILSFLFQKGKCKSCGRRISFMYPAAELVTA
CLFAAAGIRFGSSPELLPAVVFISLLIIVVVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYASLLGAAAGFLFLSLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1039437 ACCO40_RS13855 WP_061186692.1 2693820..2694566(-) (comC) [Bacillus spizizenii strain SHT-15]
ATGCTTCCCATTCTTTTTCTCCTCGGGCTGATCCTTGGTTCATTTTACTATACGGCCGGGTGCCGTATCCCCTTGCATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACATTAACCGCGGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAAGGGCAAATGTAAAAGCTGCGGACGTAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCTCATCTCCGGAACTATTGCCTGCTGTTGTGTTTATCTCTCTTCTCAT
CATTGTTGTAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGTCCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCACTTCCCTTTGCCCCCGCAATTGCGGCAGGAAGCATTTTAGCCTATTTATACGGTGACTCTATTATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

92.339

100

0.923

Multiple sequence alignment