Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACCO40_RS12780 Genome accession   NZ_CP167793
Coordinates   2505399..2506166 (-) Length   255 a.a.
NCBI ID   WP_014114447.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2500399..2511166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS12760 (ACCO40_12760) - 2500573..2501385 (-) 813 WP_372401695.1 pyruvate, water dikinase regulatory protein -
  ACCO40_RS12765 (ACCO40_12765) ccpN 2501411..2502049 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ACCO40_RS12770 (ACCO40_12770) glyS 2502182..2504221 (-) 2040 WP_242734014.1 glycine--tRNA ligase subunit beta -
  ACCO40_RS12775 (ACCO40_12775) glyQ 2504214..2505101 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACCO40_RS12780 (ACCO40_12780) recO 2505399..2506166 (-) 768 WP_014114447.1 DNA repair protein RecO Machinery gene
  ACCO40_RS12785 (ACCO40_12785) - 2506203..2506346 (-) 144 WP_003230053.1 YqzL family protein -
  ACCO40_RS12790 (ACCO40_12790) era 2506490..2507395 (-) 906 WP_014114448.1 GTPase Era -
  ACCO40_RS12795 (ACCO40_12795) - 2507376..2507786 (-) 411 WP_003226204.1 cytidine deaminase -
  ACCO40_RS12800 (ACCO40_12800) - 2507907..2508278 (-) 372 WP_114150369.1 diacylglycerol kinase family protein -
  ACCO40_RS12805 (ACCO40_12805) ybeY 2508259..2508732 (-) 474 WP_014114451.1 rRNA maturation RNase YbeY -
  ACCO40_RS12810 (ACCO40_12810) pgpH 2508733..2510868 (-) 2136 WP_072566562.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29331.06 Da        Isoelectric Point: 8.5539

>NTDB_id=1039429 ACCO40_RS12780 WP_014114447.1 2505399..2506166(-) (recO) [Bacillus spizizenii strain SHT-15]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDKGTEEKKPNPYLFEFILESFKQLNEGTDPDVIIFIAQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1039429 ACCO40_RS12780 WP_014114447.1 2505399..2506166(-) (recO) [Bacillus spizizenii strain SHT-15]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTTTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCTTATATTGCTGAGCTAGTCGACAAAGGCACAGAAGAAAAGAAGCC
AAACCCTTATTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCATCTTCA
TTGCTCAAATGAAGATGCTCGGTGTCATGGGGCTGTACCCTGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACCTTCCATTTTTCTGTTCGTGATAACGGTTTTATTTGCCATCGCTGCTTTGAAAAAGATCCCTACAGGGTTCCAATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATTTGTCGAGGCTGGGCAATGTGTCCTTAAAGCAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTATGAAGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTGATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.863

100

0.969

Multiple sequence alignment