Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACCO40_RS07930 Genome accession   NZ_CP167793
Coordinates   1517954..1518538 (+) Length   194 a.a.
NCBI ID   WP_061187376.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512954..1523538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS07900 (ACCO40_07900) dapD 1513139..1513849 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACCO40_RS07905 (ACCO40_07905) - 1513919..1515043 (+) 1125 WP_372402694.1 N-acetyldiaminopimelate deacetylase -
  ACCO40_RS07910 (ACCO40_07910) - 1515105..1515350 (+) 246 WP_003218684.1 YkuS family protein -
  ACCO40_RS07915 (ACCO40_07915) mscT 1515386..1516189 (-) 804 WP_061187375.1 small-conductance mechanosensitive channel protein MscT -
  ACCO40_RS07920 (ACCO40_07920) ahpA 1516433..1516975 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ACCO40_RS07925 (ACCO40_07925) ykuV 1517045..1517503 (+) 459 WP_014113626.1 thiol-disulfide oxidoreductase YkuV -
  ACCO40_RS07930 (ACCO40_07930) rok 1517954..1518538 (+) 585 WP_061187376.1 transcriptional regulator Rok Regulator
  ACCO40_RS07935 (ACCO40_07935) - 1518579..1519544 (-) 966 WP_014113629.1 hypothetical protein -
  ACCO40_RS07940 (ACCO40_07940) - 1519680..1520279 (+) 600 WP_372402696.1 molybdenum cofactor guanylyltransferase -
  ACCO40_RS07945 (ACCO40_07945) - 1520330..1521349 (+) 1020 WP_114150600.1 molybdopterin-synthase adenylyltransferase MoeB -
  ACCO40_RS07950 (ACCO40_07950) glp 1521367..1522659 (+) 1293 WP_014113632.1 gephyrin-like molybdotransferase Glp -
  ACCO40_RS07955 (ACCO40_07955) mobB 1522620..1523153 (+) 534 WP_014113633.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22113.10 Da        Isoelectric Point: 9.7036

>NTDB_id=1039411 ACCO40_RS07930 WP_061187376.1 1517954..1518538(+) (rok) [Bacillus spizizenii strain SHT-15]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESAESAND

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1039411 ACCO40_RS07930 WP_061187376.1 1517954..1518538(+) (rok) [Bacillus spizizenii strain SHT-15]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTAGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGGACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCACAATGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATTGAATCAGCTGA
ATCTGCAGAATCAGCAAATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

97.423

0.974

Multiple sequence alignment