Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACCO40_RS05710 Genome accession   NZ_CP167793
Coordinates   1121744..1122322 (+) Length   192 a.a.
NCBI ID   WP_014113279.1    Uniprot ID   G4NRT9
Organism   Bacillus spizizenii strain SHT-15     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116744..1127322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS05685 (ACCO40_05685) - 1117256..1117771 (-) 516 WP_371864110.1 methyl-accepting chemotaxis protein -
  ACCO40_RS05690 (ACCO40_05690) - 1118012..1118638 (-) 627 Protein_1054 protoglobin domain-containing protein -
  ACCO40_RS05695 (ACCO40_05695) - 1118693..1120222 (-) 1530 WP_090558605.1 FAD-dependent oxidoreductase -
  ACCO40_RS05700 (ACCO40_05700) - 1120334..1121191 (+) 858 WP_072183338.1 SDR family oxidoreductase -
  ACCO40_RS05705 (ACCO40_05705) - 1121218..1121451 (-) 234 WP_014113278.1 IDEAL domain-containing protein -
  ACCO40_RS05710 (ACCO40_05710) comK 1121744..1122322 (+) 579 WP_014113279.1 competence transcription factor ComK Regulator
  ACCO40_RS05715 (ACCO40_05715) - 1122368..1123267 (-) 900 WP_014113280.1 SDR family oxidoreductase -
  ACCO40_RS05720 (ACCO40_05720) - 1123485..1123754 (+) 270 WP_372402613.1 excalibur calcium-binding domain-containing protein -
  ACCO40_RS05725 (ACCO40_05725) - 1123797..1125266 (-) 1470 WP_072566050.1 sodium:solute symporter -
  ACCO40_RS05730 (ACCO40_05730) - 1125263..1125463 (-) 201 WP_014113284.1 DUF3311 domain-containing protein -
  ACCO40_RS05735 (ACCO40_05735) - 1125688..1126050 (-) 363 WP_072183342.1 hypothetical protein -
  ACCO40_RS05740 (ACCO40_05740) - 1126204..1126827 (+) 624 WP_087988040.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22355.66 Da        Isoelectric Point: 7.6610

>NTDB_id=1039398 ACCO40_RS05710 WP_014113279.1 1121744..1122322(+) (comK) [Bacillus spizizenii strain SHT-15]
MSQKTDAPLESYEVSGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1039398 ACCO40_RS05710 WP_014113279.1 1121744..1122322(+) (comK) [Bacillus spizizenii strain SHT-15]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAGCGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGTATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACAATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAGAACCAGGTATACCGGACAGCATGGCTAAGAACCAAATTCCAAGACAGAATCGAACAC
CGTGTGCCAAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974

Multiple sequence alignment