Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ACCO40_RS02040 Genome accession   NZ_CP167793
Coordinates   411428..411568 (+) Length   46 a.a.
NCBI ID   WP_236827566.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 406428..416568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS02035 (ACCO40_02035) srfAB 408292..411384 (+) 3093 Protein_357 surfactin non-ribosomal peptide synthetase SrfAB -
  ACCO40_RS02040 (ACCO40_02040) comS 411428..411568 (+) 141 WP_236827566.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5274.13 Da        Isoelectric Point: 9.2422

>NTDB_id=1039388 ACCO40_RS02040 WP_236827566.1 411428..411568(+) (comS) [Bacillus spizizenii strain SHT-15]
MNRSGKHLISSIILYPRPSGECISSISLDKQTQATMSPLYFCWREK

Nucleotide


Download         Length: 141 bp        

>NTDB_id=1039388 ACCO40_RS02040 WP_236827566.1 411428..411568(+) (comS) [Bacillus spizizenii strain SHT-15]
TTGAACCGATCAGGCAAGCACCTTATCAGCAGCATTATCCTGTATCCCCGGCCCAGCGGAGAATGTATATCCTCAATCAG
CTTGGACAAGCAAACACAAGCTACAATGTCCCCGCTGTACTTTTGCTGGAGGGAGAAGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(1-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

97.826

100

0.978

Multiple sequence alignment