Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACCO40_RS02005 Genome accession   NZ_CP167793
Coordinates   392696..393145 (-) Length   149 a.a.
NCBI ID   WP_133058581.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 387696..398145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS01965 (ACCO40_01965) - 388053..388232 (+) 180 Protein_343 hypothetical protein -
  ACCO40_RS01970 (ACCO40_01970) - 388229..388684 (+) 456 WP_014112607.1 RDD family protein -
  ACCO40_RS01975 (ACCO40_01975) - 388767..389099 (+) 333 WP_090557354.1 YckD family protein -
  ACCO40_RS01980 (ACCO40_01980) - 389231..389656 (+) 426 WP_079288199.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACCO40_RS01985 (ACCO40_01985) - 389644..389985 (+) 342 WP_072565725.1 DUF3147 family protein -
  ACCO40_RS01990 (ACCO40_01990) - 390005..390733 (+) 729 WP_372402419.1 AAA family ATPase -
  ACCO40_RS01995 (ACCO40_01995) bglC 390806..392239 (+) 1434 WP_372402420.1 6-phospho-beta-glucosidase -
  ACCO40_RS02000 (ACCO40_02000) nin/comJ 392275..392673 (-) 399 WP_072565726.1 DNA-entry nuclease inhibitor Regulator
  ACCO40_RS02005 (ACCO40_02005) nucA/comI 392696..393145 (-) 450 WP_133058581.1 DNA-entry nuclease Machinery gene
  ACCO40_RS02010 (ACCO40_02010) tlpC 393319..395043 (-) 1725 WP_087987933.1 methyl-accepting chemotaxis protein TlpC -
  ACCO40_RS02015 (ACCO40_02015) hxlB 395155..395712 (-) 558 WP_087987934.1 6-phospho-3-hexuloisomerase -
  ACCO40_RS02020 (ACCO40_02020) hxlA 395717..396349 (-) 633 WP_087987935.1 3-hexulose-6-phosphate synthase -
  ACCO40_RS02025 (ACCO40_02025) hxlR 396581..396943 (+) 363 WP_014112618.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16361.35 Da        Isoelectric Point: 4.4321

>NTDB_id=1039387 ACCO40_RS02005 WP_133058581.1 392696..393145(-) (nucA/comI) [Bacillus spizizenii strain SHT-15]
MNITMDILKTILLVIVVIAAAAVGLIKGDFFSADQKASQTKEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1039387 ACCO40_RS02005 WP_133058581.1 392696..393145(-) (nucA/comI) [Bacillus spizizenii strain SHT-15]
GTGAACATCACGATGGACATCTTAAAAACAATACTTCTCGTCATCGTCGTCATAGCAGCTGCCGCTGTCGGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAGCGTCTCAAACGAAAGAATATGACGAAACGATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCTGCTGACAACCGCGGTGCAGGCTCTTGGGTTGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.289

100

0.933

Multiple sequence alignment