Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUF32_RS02565 Genome accession   NZ_AP028128
Coordinates   534297..534815 (+) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain IDH05335     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 529297..539815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS02555 (KKIDH5335_04470) gshA 532099..533664 (+) 1566 WP_100267997.1 glutamate--cysteine ligase -
  QUF32_RS02560 (KKIDH5335_04480) - 533666..534271 (+) 606 WP_222726904.1 hypothetical protein -
  QUF32_RS02565 (KKIDH5335_04490) luxS 534297..534815 (+) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  QUF32_RS02570 (KKIDH5335_04500) - 534884..536158 (-) 1275 WP_020330450.1 HlyC/CorC family transporter -
  QUF32_RS02575 (KKIDH5335_04510) - 536248..537042 (-) 795 WP_020330452.1 inner membrane protein YpjD -
  QUF32_RS02580 (KKIDH5335_04520) ffh 537255..538637 (+) 1383 WP_020330453.1 signal recognition particle protein -
  QUF32_RS02585 (KKIDH5335_04530) rpsP 538863..539111 (+) 249 WP_020330454.1 30S ribosomal protein S16 -
  QUF32_RS02590 (KKIDH5335_04540) rimM 539139..539693 (+) 555 WP_020330455.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=103935 QUF32_RS02565 WP_020330449.1 534297..534815(+) (luxS) [Vibrio fluvialis strain IDH05335]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=103935 QUF32_RS02565 WP_020330449.1 534297..534815(+) (luxS) [Vibrio fluvialis strain IDH05335]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCCTGGTTGGCTGC
AATGCAAGATGTACTGAAAGTGGAAAGTCAGGACAAGATTCCTGAGCTGAACGAATACCAGTGTGGCACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment