Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACDJ02_RS02240 Genome accession   NZ_CP167777
Coordinates   473660..473986 (+) Length   108 a.a.
NCBI ID   WP_004995304.1    Uniprot ID   A0A3F3L3D3
Organism   Acinetobacter ursingii strain E5131942     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 468660..478986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS02215 (ACDJ02_02215) hemC 468890..469807 (+) 918 WP_151724159.1 hydroxymethylbilane synthase -
  ACDJ02_RS02220 (ACDJ02_02220) - 469833..470615 (+) 783 WP_151724160.1 uroporphyrinogen-III synthase -
  ACDJ02_RS02225 (ACDJ02_02225) - 470612..471448 (+) 837 WP_151724161.1 hypothetical protein -
  ACDJ02_RS02230 (ACDJ02_02230) - 471458..472645 (+) 1188 WP_151831782.1 heme biosynthesis protein HemY -
  ACDJ02_RS02235 (ACDJ02_02235) - 472654..473088 (+) 435 WP_151788667.1 thioesterase family protein -
  ACDJ02_RS02240 (ACDJ02_02240) hns 473660..473986 (+) 327 WP_004995304.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACDJ02_RS02245 (ACDJ02_02245) gspN 474151..474894 (+) 744 WP_151788908.1 type II secretion system protein N -
  ACDJ02_RS02250 (ACDJ02_02250) - 474894..475727 (+) 834 WP_151725334.1 type II secretion system protein N -
  ACDJ02_RS02255 (ACDJ02_02255) gspD 475770..478049 (+) 2280 WP_151725335.1 type II secretion system secretin GspD -
  ACDJ02_RS02260 (ACDJ02_02260) - 478119..478772 (+) 654 WP_151725336.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12432.09 Da        Isoelectric Point: 4.8700

>NTDB_id=1039299 ACDJ02_RS02240 WP_004995304.1 473660..473986(+) (hns) [Acinetobacter ursingii strain E5131942]
MKPDISELSVDELKRLQEEAEALIASKKDQAIEDAYNQILAVAEAVGFTVEELLEYGEQKRKKTTRKAVEPRYRNKNNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1039299 ACDJ02_RS02240 WP_004995304.1 473660..473986(+) (hns) [Acinetobacter ursingii strain E5131942]
ATGAAACCAGATATTAGTGAACTTTCGGTTGATGAGTTAAAACGGTTGCAAGAAGAAGCTGAGGCATTAATTGCATCTAA
AAAAGATCAGGCAATTGAAGATGCTTATAATCAAATTTTAGCAGTTGCTGAGGCAGTGGGCTTTACGGTTGAAGAATTAC
TTGAGTATGGTGAGCAAAAGCGTAAAAAAACTACGCGTAAAGCCGTTGAGCCGCGCTACCGTAATAAAAATAATCCAGAA
GAAACTTGGACTGGTCGTGGTAAACAACCTCGCTGGCTTGTTGCTGAACTTGAAAAAGGTGCAAAACTTGAAGACTTCTT
GATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889

Multiple sequence alignment