Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AACH31_RS10730 Genome accession   NZ_AP028127
Coordinates   2195565..2196521 (-) Length   318 a.a.
NCBI ID   WP_161832889.1    Uniprot ID   -
Organism   Turicibacter faecis strain TC023     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2190565..2201521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH31_RS10710 (T23_19770) - 2190641..2192296 (-) 1656 WP_161832885.1 hypothetical protein -
  AACH31_RS10715 (T23_19780) - 2192874..2193839 (-) 966 WP_161832886.1 siderophore ABC transporter substrate-binding protein -
  AACH31_RS10720 (T23_19790) - 2193876..2194631 (-) 756 WP_338506668.1 ATP-binding cassette domain-containing protein -
  AACH31_RS10725 (T23_19800) - 2194628..2195578 (-) 951 WP_262951134.1 iron chelate uptake ABC transporter family permease subunit -
  AACH31_RS10730 (T23_19810) ceuB 2195565..2196521 (-) 957 WP_161832889.1 ABC transporter permease Machinery gene
  AACH31_RS10735 (T23_19820) - 2196703..2197071 (+) 369 WP_338506666.1 AraC family transcriptional regulator -
  AACH31_RS10740 (T23_19830) - 2197098..2198381 (-) 1284 WP_161832891.1 alkaline phosphatase family protein -
  AACH31_RS10745 (T23_19840) - 2198350..2198478 (-) 129 WP_255421510.1 hypothetical protein -
  AACH31_RS10750 (T23_19850) - 2198751..2199053 (-) 303 WP_338617618.1 CAAX protease family protein -
  AACH31_RS10755 (T23_19860) hslO 2199070..2199936 (-) 867 WP_338617621.1 Hsp33 family molecular chaperone HslO -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34765.85 Da        Isoelectric Point: 9.7905

>NTDB_id=103922 AACH31_RS10730 WP_161832889.1 2195565..2196521(-) (ceuB) [Turicibacter faecis strain TC023]
MRKRYLIILLGVLSVISVFIGASDVTLSSILNGDSQQLYILFISRIPRLLSVCVTGVGMGICGLIMQQLTRNKFVSPTTA
ATMDFAKLGMLIAMVFFAGASLVHKMVFAFICSLLGTFLFMGIMKQVKFRNSLFIPLIGMMLGNVVNSITSFIAYQFDLV
QNISSWAQGDFTNIMKGNYELLYLSIPLVFIAFLYANKFTIAGMGEDFSANLGLNHKWVVNVGLTIIALITSVIIITVGS
IPFIGLIVPNVVSMYLGDNLKRGLWHTALMGALFLLACDVIGRIVIYPYEVSIGLTVGVIGSIIFLYMLMRRGSNASA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=103922 AACH31_RS10730 WP_161832889.1 2195565..2196521(-) (ceuB) [Turicibacter faecis strain TC023]
ATGAGGAAGAGGTATTTAATCATTTTATTAGGAGTGCTATCGGTTATTTCTGTTTTTATAGGTGCAAGCGACGTAACGTT
ATCCTCCATTTTGAACGGAGATTCTCAACAATTATATATCCTTTTTATTAGTCGTATTCCACGTCTATTGAGTGTTTGTG
TGACCGGGGTTGGAATGGGGATTTGCGGTTTAATTATGCAACAATTAACAAGGAATAAGTTTGTTTCTCCGACAACGGCG
GCTACAATGGATTTTGCTAAACTCGGAATGTTAATTGCGATGGTCTTTTTTGCCGGGGCATCACTGGTTCATAAAATGGT
GTTTGCCTTTATTTGTTCATTGCTAGGGACATTTCTCTTTATGGGAATTATGAAGCAAGTAAAGTTCCGAAATTCCTTGT
TTATTCCTTTAATCGGGATGATGCTTGGAAATGTTGTGAATTCAATTACTAGCTTTATTGCTTATCAGTTCGATTTAGTT
CAAAATATTTCGTCTTGGGCTCAAGGGGATTTTACGAATATTATGAAAGGAAATTATGAACTGTTATATCTTAGTATTCC
TTTGGTTTTTATTGCGTTTCTGTATGCCAATAAATTTACGATTGCAGGAATGGGAGAAGATTTTTCAGCAAATTTAGGTT
TAAATCATAAGTGGGTAGTAAACGTTGGATTAACAATTATTGCTCTGATTACATCTGTGATTATTATTACGGTTGGATCG
ATCCCGTTTATTGGATTAATTGTTCCTAATGTGGTGTCGATGTATTTAGGAGATAATTTAAAACGTGGTCTCTGGCATAC
AGCTTTGATGGGAGCCTTATTTCTATTAGCCTGTGATGTGATTGGACGAATCGTTATATATCCATACGAAGTTTCTATCG
GTTTAACCGTTGGGGTTATCGGAAGTATAATCTTCTTATACATGCTGATGAGGAGGGGTTCAAATGCGTCGGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.479

98.428

0.497

Multiple sequence alignment