Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CIL07_RS06340 Genome accession   NZ_CP167253
Coordinates   1318013..1319377 (-) Length   454 a.a.
NCBI ID   WP_003580798.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. paracasei strain NTU 101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1313013..1324377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIL07_RS06315 (CIL07_06315) - 1313510..1314526 (-) 1017 WP_103213941.1 DUF5808 domain-containing protein -
  CIL07_RS06320 (CIL07_06320) - 1314533..1314907 (-) 375 WP_003567242.1 GntR family transcriptional regulator -
  CIL07_RS06325 (CIL07_06325) - 1315072..1316343 (-) 1272 WP_103213942.1 MucBP domain-containing protein -
  CIL07_RS06330 (CIL07_06330) - 1316668..1316763 (+) 96 Protein_1245 MutR family positive transcriptional regulator -
  CIL07_RS06335 (CIL07_06335) - 1316876..1317991 (-) 1116 WP_103213943.1 PIN/TRAM domain-containing protein -
  CIL07_RS06340 (CIL07_06340) radA 1318013..1319377 (-) 1365 WP_003580798.1 DNA repair protein RadA Machinery gene
  CIL07_RS06345 (CIL07_06345) - 1319394..1319936 (-) 543 WP_103213944.1 dUTP diphosphatase -
  CIL07_RS06350 (CIL07_06350) - 1320157..1320447 (+) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  CIL07_RS06355 (CIL07_06355) - 1320564..1320941 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  CIL07_RS06360 (CIL07_06360) - 1320998..1321918 (-) 921 WP_003574021.1 IS30 family transposase -
  CIL07_RS06365 (CIL07_06365) - 1322241..1323560 (+) 1320 WP_103213945.1 aminopeptidase C -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49140.50 Da        Isoelectric Point: 7.4216

>NTDB_id=1039146 CIL07_RS06340 WP_003580798.1 1318013..1319377(-) (radA) [Lacticaseibacillus paracasei subsp. paracasei strain NTU 101]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKIKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1039146 CIL07_RS06340 WP_003580798.1 1318013..1319377(-) (radA) [Lacticaseibacillus paracasei subsp. paracasei strain NTU 101]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAGCCGGCAGCAAGA
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTGCTATTACA
AGTATCAGGACAGTTGGCTAATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGTGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATTGGCATTTTCGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGCGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAATTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTGGGTTTCAAACGGATTTTTGTACCCCGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.212

99.78

0.681
  radA Streptococcus pneumoniae Rx1

68.212

99.78

0.681
  radA Streptococcus pneumoniae D39

68.212

99.78

0.681
  radA Streptococcus pneumoniae R6

68.212

99.78

0.681
  radA Streptococcus pneumoniae TIGR4

68.212

99.78

0.681
  radA Streptococcus mitis SK321

67.991

99.78

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

64.537

100

0.645

Multiple sequence alignment