Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AACH31_RS04560 Genome accession   NZ_AP028127
Coordinates   946410..948167 (+) Length   585 a.a.
NCBI ID   WP_161832058.1    Uniprot ID   -
Organism   Turicibacter faecis strain TC023     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 941410..953167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH31_RS04545 (T23_08530) - 942800..943474 (+) 675 WP_161832061.1 response regulator transcription factor -
  AACH31_RS04550 (T23_08540) - 943471..944502 (+) 1032 WP_161832060.1 HAMP domain-containing sensor histidine kinase -
  AACH31_RS04555 (T23_08550) rcrP 944653..946413 (+) 1761 WP_161832059.1 ABC transporter ATP-binding protein Regulator
  AACH31_RS04560 (T23_08560) rcrQ 946410..948167 (+) 1758 WP_161832058.1 ABC transporter ATP-binding protein Regulator
  AACH31_RS04565 (T23_08570) - 948831..949028 (+) 198 WP_161832057.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  AACH31_RS04570 (T23_08580) - 949203..950540 (+) 1338 WP_338617963.1 hypothetical protein -
  AACH31_RS04575 (T23_08590) - 950597..951760 (+) 1164 WP_161831670.1 MFS transporter -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 65345.94 Da        Isoelectric Point: 5.3568

>NTDB_id=103909 AACH31_RS04560 WP_161832058.1 946410..948167(+) (rcrQ) [Turicibacter faecis strain TC023]
MRKMEKKESSFLKLLKYCKKYTVQIIIALIGSVIGTLLTLFGPDKLSEMTDLMTNGLMGELDLEGITSIGITLVMIYAVS
FILSLTQGLIMTQVIQRVSKQLRTSLTVKINRLPMSYYNQATTGDILSRVTNDVDTLGQSLNQSLTTLVSATCLFIGSIV
MMLKTNVVLTLTAILATIIGFIMMMFIMKRSQVFFLKQQEGLGKLNGYIEEAYSGQMIIKAYNSEEKMISTFQTINEELT
SNTYRAQILAGFMMPLMTFIGNLGYVAVCIVGALLTMNGTISFGVIVAFIMYVRYFTQPLAQMAQAAQSLQSASAAGHRV
FEFLEAWEMEDESKKAGYLEEVTGKVEFDHVSFAYEGSDRPVIKDFSMTAHPGQKVAIVGPTGAGKTTLVNLLMRFNEIN
RGDIRIDDVSIHDMTRENIHDLFCMVLQDTWLFEGTIKENLIYNQTHLTDEDVERACEAVGLHHFIQTLPEGYETRLNDQ
LNLSAGQKQQLTIARAMLKNSPMLILDEATSSVDTRTELIIQQAMDQLMHGRTSFIIAHRLSTIKNADVILVLKDGDILE
SGNHEQLLAKGGFYAELYNSQFEQV

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=103909 AACH31_RS04560 WP_161832058.1 946410..948167(+) (rcrQ) [Turicibacter faecis strain TC023]
ATGAGAAAGATGGAGAAAAAGGAGAGTAGTTTTTTAAAATTATTAAAATATTGTAAAAAATATACGGTGCAAATTATCAT
AGCGCTCATTGGAAGTGTAATTGGAACCCTCTTAACTCTTTTTGGTCCAGATAAATTATCAGAAATGACCGATTTAATGA
CAAATGGGTTAATGGGCGAGCTTGATTTAGAAGGAATTACTTCGATTGGGATCACGCTTGTAATGATTTATGCTGTTAGT
TTCATTTTATCACTGACGCAAGGACTCATTATGACACAAGTGATTCAGCGAGTTTCTAAGCAATTACGAACATCGTTAAC
GGTGAAGATTAACCGCTTACCGATGAGTTATTATAATCAAGCAACGACAGGTGATATTTTATCACGCGTGACAAATGATG
TGGATACGTTAGGGCAATCATTAAACCAAAGTTTAACCACATTAGTCAGCGCAACTTGTTTGTTTATTGGGTCAATTGTG
ATGATGTTAAAGACAAATGTCGTGCTAACGCTAACGGCAATACTGGCGACAATTATTGGATTTATTATGATGATGTTCAT
TATGAAACGCTCTCAGGTGTTCTTTTTAAAGCAACAAGAGGGGCTTGGGAAATTAAATGGTTATATTGAAGAGGCTTATT
CAGGTCAGATGATTATTAAAGCTTACAATAGTGAAGAAAAGATGATTTCAACTTTTCAAACGATTAATGAGGAATTGACA
TCTAATACTTACCGGGCACAAATTCTTGCCGGATTTATGATGCCACTGATGACCTTTATCGGTAACCTTGGCTACGTAGC
CGTTTGTATTGTCGGGGCATTATTGACGATGAATGGAACGATTTCATTCGGGGTCATTGTGGCGTTCATTATGTATGTCC
GCTATTTTACACAACCTCTTGCACAAATGGCACAAGCTGCCCAAAGTTTACAATCCGCTTCGGCAGCAGGGCACCGCGTT
TTTGAGTTTTTAGAAGCTTGGGAAATGGAAGACGAGTCAAAAAAGGCCGGTTATTTAGAAGAAGTAACAGGAAAAGTAGA
ATTTGACCATGTCTCATTCGCCTATGAAGGAAGTGATCGCCCTGTCATTAAAGATTTCTCAATGACGGCACATCCAGGGC
AAAAAGTTGCGATTGTCGGACCAACAGGAGCGGGAAAAACGACGCTTGTTAATTTATTGATGCGATTTAATGAAATCAAT
CGAGGAGATATTCGAATTGATGACGTTTCAATTCATGATATGACGCGTGAAAACATCCATGATTTATTTTGTATGGTTTT
ACAAGACACTTGGTTGTTTGAAGGAACGATTAAAGAAAATTTAATTTATAATCAAACGCATTTAACGGATGAAGATGTTG
AGCGCGCTTGTGAAGCGGTCGGATTACACCATTTTATTCAAACGTTGCCGGAAGGGTATGAAACGCGATTAAATGATCAA
CTTAACTTGTCGGCCGGTCAAAAGCAACAGCTCACGATTGCCCGAGCGATGCTTAAAAATTCACCGATGCTTATTTTAGA
TGAGGCGACAAGTTCGGTCGATACGAGAACAGAATTAATCATTCAACAAGCGATGGATCAGTTAATGCACGGTCGAACTT
CCTTTATTATTGCGCACCGTTTATCAACGATAAAAAATGCAGATGTGATTTTAGTTTTAAAAGATGGCGATATTTTAGAA
AGCGGAAACCATGAACAATTACTAGCAAAAGGCGGTTTTTACGCTGAACTTTATAACAGTCAATTCGAACAAGTATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.186

99.487

0.559

Multiple sequence alignment