Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AACH31_RS04555 Genome accession   NZ_AP028127
Coordinates   944653..946413 (+) Length   586 a.a.
NCBI ID   WP_161832059.1    Uniprot ID   -
Organism   Turicibacter faecis strain TC023     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 939653..951413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH31_RS04535 (T23_08510) - 940307..940564 (+) 258 WP_161832063.1 SH3 domain-containing protein -
  AACH31_RS04540 (T23_08520) - 940944..942446 (+) 1503 WP_262950643.1 hypothetical protein -
  AACH31_RS04545 (T23_08530) - 942800..943474 (+) 675 WP_161832061.1 response regulator transcription factor -
  AACH31_RS04550 (T23_08540) - 943471..944502 (+) 1032 WP_161832060.1 HAMP domain-containing sensor histidine kinase -
  AACH31_RS04555 (T23_08550) rcrP 944653..946413 (+) 1761 WP_161832059.1 ABC transporter ATP-binding protein Regulator
  AACH31_RS04560 (T23_08560) rcrQ 946410..948167 (+) 1758 WP_161832058.1 ABC transporter ATP-binding protein Regulator
  AACH31_RS04565 (T23_08570) - 948831..949028 (+) 198 WP_161832057.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  AACH31_RS04570 (T23_08580) - 949203..950540 (+) 1338 WP_338617963.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65541.29 Da        Isoelectric Point: 5.6613

>NTDB_id=103908 AACH31_RS04555 WP_161832059.1 944653..946413(+) (rcrP) [Turicibacter faecis strain TC023]
MIKMFRQLKKREWLLFLCSVLFIIAQVWLDLKLPDYMSKITQLVQTEGSEMEEILAAGGKMLLCAFFSLATSFIVAAISA
KIAANLSGRLRFALFNRVQSFSMEEINHFSTASLVTRSTNDVTQVQMFVVMGLQILIKAPILAGWALVKITNKGWQWTLA
TAVAVAVLIVIVSICVWLGMPKFKGIQRLTDNVNKIAREHINGLRVIRAYNAEGYQEEKFERANTELTYNNLFVGRVMAF
LFPSINLIMSGLTLAIYWIGAFLIDGAIGMERMTVFSDMIVFSSYAMQVVMAFMMLIMIMFILPRATVSASRINEVLEMK
PTIEDGNFIPKDERLMGEIEFKDVCFRYADGEDYVLDNINFKVSQGETVALIGATGCGKSTLVNLIPRFYDVTEGEILIG
GVNIKDYDQQALRNELGYVSQRAILFEGTIQSNVAFGDNGKASSQDETVEEAIEIAQASEFVNKMEERYEAHVAQGGTNL
SGGQKQRLSIARAVARRPKVLIFDDSFSALDYKTDRTLRQRLKKETAGATLFIVAQRIGTIKDADKIIVLDEGRIVGMGS
HDSLMASCEVYREIAYSQLSKEELES

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=103908 AACH31_RS04555 WP_161832059.1 944653..946413(+) (rcrP) [Turicibacter faecis strain TC023]
ATGATTAAGATGTTTCGACAATTAAAAAAGAGGGAGTGGCTATTGTTTTTATGTAGCGTCCTCTTCATCATTGCCCAAGT
CTGGCTTGATTTAAAATTACCGGACTACATGAGTAAGATTACGCAGTTAGTGCAAACAGAAGGAAGTGAGATGGAAGAAA
TTTTAGCGGCAGGCGGGAAGATGTTACTATGTGCCTTTTTTAGCCTAGCGACTTCTTTTATTGTAGCGGCGATTTCGGCG
AAAATAGCGGCCAATTTATCCGGAAGATTACGTTTTGCACTGTTTAACCGTGTTCAGTCGTTTTCAATGGAGGAAATTAA
CCATTTTTCAACAGCAAGTCTTGTGACGCGTTCAACAAATGATGTGACGCAAGTTCAAATGTTTGTTGTCATGGGGCTTC
AAATACTGATTAAGGCACCCATTTTAGCAGGATGGGCCTTAGTAAAGATTACGAATAAAGGTTGGCAATGGACGTTAGCG
ACGGCAGTGGCAGTTGCTGTTTTAATTGTTATCGTTTCCATTTGCGTTTGGTTAGGAATGCCAAAGTTTAAGGGCATTCA
ACGCTTAACCGATAATGTCAATAAAATTGCACGTGAGCATATTAATGGATTACGCGTGATTCGAGCTTATAATGCCGAAG
GATATCAAGAGGAAAAATTTGAAAGAGCCAATACCGAGTTAACGTACAATAATTTATTTGTTGGGCGTGTCATGGCCTTT
TTGTTTCCAAGTATTAACTTAATTATGAGTGGTTTAACGCTTGCGATCTACTGGATTGGTGCCTTCTTAATTGATGGGGC
AATTGGAATGGAACGAATGACGGTTTTTTCAGATATGATCGTCTTCTCTTCTTACGCGATGCAAGTCGTGATGGCTTTTA
TGATGCTCATTATGATTATGTTTATCCTTCCTCGAGCGACGGTTTCAGCGAGTCGAATTAATGAGGTGCTGGAGATGAAG
CCGACCATTGAAGACGGGAATTTTATTCCTAAGGATGAGCGATTGATGGGAGAGATTGAATTTAAAGATGTTTGCTTTAG
ATACGCTGATGGTGAGGACTATGTTTTAGATAACATTAATTTTAAAGTGTCCCAAGGAGAAACGGTTGCCCTTATTGGAG
CGACAGGGTGTGGAAAAAGTACACTGGTTAATTTAATCCCACGTTTTTACGATGTAACAGAAGGTGAGATTTTAATTGGC
GGAGTCAATATTAAAGACTACGACCAGCAGGCGCTTCGTAATGAATTAGGTTATGTTTCACAACGTGCCATCTTATTTGA
GGGAACCATTCAGTCAAATGTCGCGTTTGGAGATAACGGAAAAGCGTCATCTCAAGATGAAACGGTAGAAGAAGCCATCG
AGATTGCTCAAGCGTCAGAGTTTGTTAACAAGATGGAAGAGAGATATGAGGCGCATGTTGCACAAGGTGGAACGAATTTA
TCTGGAGGTCAAAAACAACGGTTATCGATTGCAAGGGCTGTTGCCCGTCGTCCGAAGGTCCTTATTTTTGACGATTCTTT
TTCTGCCCTAGACTATAAAACGGATCGAACACTCCGTCAGCGGCTTAAAAAGGAAACGGCTGGTGCCACGTTATTTATTG
TCGCCCAACGAATTGGAACCATTAAGGATGCAGATAAAATTATTGTTTTGGATGAAGGACGAATTGTTGGAATGGGATCT
CATGATTCTTTAATGGCATCTTGTGAGGTTTATCGTGAAATTGCATACTCTCAACTTTCAAAGGAGGAACTTGAGTCATG
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.586

100

0.527

Multiple sequence alignment