Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | AACH31_RS00290 | Genome accession | NZ_AP028127 |
| Coordinates | 55177..56565 (+) | Length | 462 a.a. |
| NCBI ID | WP_262950124.1 | Uniprot ID | - |
| Organism | Turicibacter faecis strain TC023 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 50177..61565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH31_RS00275 (T23_00270) | - | 52443..52766 (+) | 324 | WP_161832622.1 | hypothetical protein | - |
| AACH31_RS00280 (T23_00280) | - | 52847..53383 (+) | 537 | WP_262950125.1 | RNA polymerase sigma factor | - |
| AACH31_RS00285 (T23_00290) | hflX | 53449..54714 (-) | 1266 | WP_161832624.1 | GTPase HflX | - |
| AACH31_RS00290 (T23_00300) | radA | 55177..56565 (+) | 1389 | WP_262950124.1 | DNA repair protein RadA | Machinery gene |
| AACH31_RS00295 (T23_00310) | - | 56907..57881 (+) | 975 | WP_338617732.1 | hypothetical protein | - |
| AACH31_RS00300 (T23_00320) | - | 58010..58321 (+) | 312 | WP_262950121.1 | hypothetical protein | - |
| AACH31_RS00305 (T23_00330) | - | 58807..60027 (-) | 1221 | WP_161832628.1 | cation:proton antiporter | - |
Sequence
Protein
Download Length: 462 a.a. Molecular weight: 51018.97 Da Isoelectric Point: 7.9896
>NTDB_id=103903 AACH31_RS00290 WP_262950124.1 55177..56565(+) (radA) [Turicibacter faecis strain TC023]
MARAKAKTSFFCQQCGMESLKWVGRCPGCGEWNTMVEELKPTKAEQRRGFVASESMAKPQRLHEIETKEESRIHTSMSEL
NRVLGGGIVRGSLVLCGGEPGIGKSTLLLQTAQDLAHKGVQVLYVSGEESARQIKLRAERLGVTSDHLYIYAETDLTLID
RQIQQLKPEFVIIDSIQTIHMPEVTSAPGSVSQVRECTAQLMRIAKIGGISIFIVGHVTKDGNIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFDMKEEGLDEVTNASEVFLEDRTKGLPGTAIMASIEGTRPILVEIQSLLTPTSF
GNPKRMASGVDYNRVSLILAVLEKRMGFFLQNQDTYVKVTGGVKVDEPAVDLAIVASIVSSYKDKMTPSGDVYMGEVGLT
GEIRRVSRIEERVKEAKKLGFTRAIIPKKNMSGWKVPSGIEVVGVDTIAEALKAMFKEDLKF
MARAKAKTSFFCQQCGMESLKWVGRCPGCGEWNTMVEELKPTKAEQRRGFVASESMAKPQRLHEIETKEESRIHTSMSEL
NRVLGGGIVRGSLVLCGGEPGIGKSTLLLQTAQDLAHKGVQVLYVSGEESARQIKLRAERLGVTSDHLYIYAETDLTLID
RQIQQLKPEFVIIDSIQTIHMPEVTSAPGSVSQVRECTAQLMRIAKIGGISIFIVGHVTKDGNIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFDMKEEGLDEVTNASEVFLEDRTKGLPGTAIMASIEGTRPILVEIQSLLTPTSF
GNPKRMASGVDYNRVSLILAVLEKRMGFFLQNQDTYVKVTGGVKVDEPAVDLAIVASIVSSYKDKMTPSGDVYMGEVGLT
GEIRRVSRIEERVKEAKKLGFTRAIIPKKNMSGWKVPSGIEVVGVDTIAEALKAMFKEDLKF
Nucleotide
Download Length: 1389 bp
>NTDB_id=103903 AACH31_RS00290 WP_262950124.1 55177..56565(+) (radA) [Turicibacter faecis strain TC023]
ATGGCAAGAGCAAAGGCGAAAACATCATTTTTTTGTCAACAGTGTGGAATGGAAAGTTTAAAGTGGGTCGGTAGATGTCC
CGGTTGTGGTGAATGGAATACGATGGTGGAGGAATTGAAGCCAACGAAGGCGGAGCAACGCCGCGGATTTGTGGCAAGTG
AAAGTATGGCAAAGCCTCAACGTTTACATGAGATTGAAACGAAAGAGGAGTCTCGTATTCACACGTCGATGAGCGAATTA
AATCGTGTATTAGGTGGAGGAATTGTTCGAGGCTCATTAGTTCTTTGTGGTGGAGAACCGGGGATTGGAAAATCAACGCT
TCTTTTACAAACGGCTCAAGATTTGGCGCATAAAGGTGTTCAAGTGTTATATGTTTCAGGAGAGGAGTCTGCGCGTCAAA
TTAAGTTGCGTGCCGAACGTCTAGGGGTTACAAGTGATCATCTCTACATTTATGCTGAGACCGATTTGACGTTAATTGAT
CGTCAAATTCAGCAGTTAAAACCGGAATTTGTTATTATTGACTCGATTCAAACGATTCATATGCCTGAGGTCACTTCAGC
CCCTGGGAGTGTGTCACAAGTTCGCGAGTGTACGGCGCAGTTAATGAGGATTGCGAAGATAGGGGGGATTTCTATTTTTA
TTGTGGGCCATGTGACGAAAGATGGGAATATTGCGGGGCCTCGTTTACTTGAACATATGGTGGATACGGTGTTATATTTT
GAAGGGGAAAGGCATCATACGTATCGTATTTTACGCGCCGTTAAAAATCGTTTTGGTTCAACGAATGAAATTGGAATTTT
TGATATGAAAGAAGAGGGCCTTGATGAGGTGACGAATGCATCGGAGGTTTTCTTAGAGGATCGCACGAAGGGATTACCAG
GGACGGCTATTATGGCATCCATTGAGGGGACGCGTCCGATTCTTGTCGAGATTCAATCGTTGTTAACGCCGACGTCGTTT
GGGAATCCGAAGCGAATGGCATCTGGGGTTGATTATAATCGTGTCTCTTTAATTTTGGCGGTTCTTGAAAAGCGCATGGG
CTTTTTCCTGCAAAATCAAGACACGTATGTAAAGGTCACAGGTGGGGTAAAAGTGGATGAACCGGCAGTGGATTTAGCGA
TTGTCGCAAGTATTGTATCAAGTTATAAGGATAAGATGACACCGAGCGGTGATGTTTATATGGGAGAGGTTGGATTAACG
GGAGAAATCCGCCGTGTTTCACGCATTGAAGAGCGCGTGAAAGAGGCGAAAAAGTTAGGATTTACTCGTGCTATTATTCC
TAAGAAAAATATGAGTGGTTGGAAGGTGCCATCAGGAATTGAGGTTGTAGGAGTGGATACGATTGCGGAAGCATTGAAGG
CGATGTTTAAGGAGGATTTAAAATTTTAA
ATGGCAAGAGCAAAGGCGAAAACATCATTTTTTTGTCAACAGTGTGGAATGGAAAGTTTAAAGTGGGTCGGTAGATGTCC
CGGTTGTGGTGAATGGAATACGATGGTGGAGGAATTGAAGCCAACGAAGGCGGAGCAACGCCGCGGATTTGTGGCAAGTG
AAAGTATGGCAAAGCCTCAACGTTTACATGAGATTGAAACGAAAGAGGAGTCTCGTATTCACACGTCGATGAGCGAATTA
AATCGTGTATTAGGTGGAGGAATTGTTCGAGGCTCATTAGTTCTTTGTGGTGGAGAACCGGGGATTGGAAAATCAACGCT
TCTTTTACAAACGGCTCAAGATTTGGCGCATAAAGGTGTTCAAGTGTTATATGTTTCAGGAGAGGAGTCTGCGCGTCAAA
TTAAGTTGCGTGCCGAACGTCTAGGGGTTACAAGTGATCATCTCTACATTTATGCTGAGACCGATTTGACGTTAATTGAT
CGTCAAATTCAGCAGTTAAAACCGGAATTTGTTATTATTGACTCGATTCAAACGATTCATATGCCTGAGGTCACTTCAGC
CCCTGGGAGTGTGTCACAAGTTCGCGAGTGTACGGCGCAGTTAATGAGGATTGCGAAGATAGGGGGGATTTCTATTTTTA
TTGTGGGCCATGTGACGAAAGATGGGAATATTGCGGGGCCTCGTTTACTTGAACATATGGTGGATACGGTGTTATATTTT
GAAGGGGAAAGGCATCATACGTATCGTATTTTACGCGCCGTTAAAAATCGTTTTGGTTCAACGAATGAAATTGGAATTTT
TGATATGAAAGAAGAGGGCCTTGATGAGGTGACGAATGCATCGGAGGTTTTCTTAGAGGATCGCACGAAGGGATTACCAG
GGACGGCTATTATGGCATCCATTGAGGGGACGCGTCCGATTCTTGTCGAGATTCAATCGTTGTTAACGCCGACGTCGTTT
GGGAATCCGAAGCGAATGGCATCTGGGGTTGATTATAATCGTGTCTCTTTAATTTTGGCGGTTCTTGAAAAGCGCATGGG
CTTTTTCCTGCAAAATCAAGACACGTATGTAAAGGTCACAGGTGGGGTAAAAGTGGATGAACCGGCAGTGGATTTAGCGA
TTGTCGCAAGTATTGTATCAAGTTATAAGGATAAGATGACACCGAGCGGTGATGTTTATATGGGAGAGGTTGGATTAACG
GGAGAAATCCGCCGTGTTTCACGCATTGAAGAGCGCGTGAAAGAGGCGAAAAAGTTAGGATTTACTCGTGCTATTATTCC
TAAGAAAAATATGAGTGGTTGGAAGGTGCCATCAGGAATTGAGGTTGTAGGAGTGGATACGATTGCGGAAGCATTGAAGG
CGATGTTTAAGGAGGATTTAAAATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
65.487 |
97.835 |
0.641 |
| radA | Streptococcus pneumoniae Rx1 |
59.603 |
98.052 |
0.584 |
| radA | Streptococcus pneumoniae D39 |
59.603 |
98.052 |
0.584 |
| radA | Streptococcus pneumoniae R6 |
59.603 |
98.052 |
0.584 |
| radA | Streptococcus pneumoniae TIGR4 |
59.603 |
98.052 |
0.584 |
| radA | Streptococcus mitis NCTC 12261 |
59.603 |
98.052 |
0.584 |
| radA | Streptococcus mitis SK321 |
59.603 |
98.052 |
0.584 |