Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACCP98_RS15980 Genome accession   NZ_CP167222
Coordinates   3668065..3668184 (-) Length   39 a.a.
NCBI ID   WP_136732873.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 3796     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3663065..3673184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP98_RS15965 (ACCP98_15965) sucC 3663100..3664269 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCP98_RS15970 (ACCP98_15970) - 3664501..3666114 (+) 1614 WP_122273517.1 PAS domain-containing sensor histidine kinase -
  ACCP98_RS15975 (ACCP98_15975) pilR 3666382..3667836 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP98_RS15980 (ACCP98_15980) pilB 3668065..3668184 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP98_RS15985 (ACCP98_15985) pilB 3668462..3670198 (-) 1737 WP_218557137.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP98_RS15990 (ACCP98_15990) - 3670233..3671759 (-) 1527 WP_218557136.1 spermidine synthase -
  ACCP98_RS15995 (ACCP98_15995) - 3671729..3672355 (-) 627 WP_228737286.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4166.87 Da        Isoelectric Point: 11.0375

>NTDB_id=1038947 ACCP98_RS15980 WP_136732873.1 3668065..3668184(-) (pilB) [Xanthomonas campestris pv. fici strain NCPPB 3796]
MKIASATQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1038947 ACCP98_RS15980 WP_136732873.1 3668065..3668184(-) (pilB) [Xanthomonas campestris pv. fici strain NCPPB 3796]
ATGAAGATCGCCAGCGCCACGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCCTTGATGAAGGCTGCCCACGGGGT
GACCAGCCTGGCCGAGATCAATCGGGTGACCAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487

Multiple sequence alignment