Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CF57_RS05430 Genome accession   NZ_CP007390
Coordinates   1094763..1095278 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ST540     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089763..1100278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF57_RS05385 (CF57_06895) csrA 1090350..1090535 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CF57_RS05415 (CF57_06950) yqaB 1091993..1092559 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CF57_RS05420 (CF57_06955) yqaA 1092556..1092984 (+) 429 WP_001287454.1 YqaA family protein -
  CF57_RS05425 (CF57_06960) gshA 1093057..1094613 (+) 1557 WP_000611812.1 glutamate--cysteine ligase -
  CF57_RS05430 (CF57_06970) luxS 1094763..1095278 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CF57_RS05435 (CF57_06975) emrB 1095342..1096880 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CF57_RS05440 (CF57_06980) emrA 1096897..1098069 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CF57_RS05445 (CF57_06990) emrR 1098196..1098726 (-) 531 WP_025325170.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CF57_RS05450 (CF57_06995) ygaH 1098817..1099152 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CF57_RS05455 (CF57_07000) ygaZ 1099142..1099879 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=103887 CF57_RS05430 WP_001130211.1 1094763..1095278(+) (luxS) [Escherichia coli strain ST540]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=103887 CF57_RS05430 WP_001130211.1 1094763..1095278(+) (luxS) [Escherichia coli strain ST540]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment