Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACBW56_RS11975 Genome accession   NZ_CP167196
Coordinates   2477530..2477967 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain FRI-TD24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2472530..2482967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBW56_RS11960 (ACBW56_11960) - 2475388..2475750 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  ACBW56_RS11965 (ACBW56_11965) hxlA 2475982..2476617 (+) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  ACBW56_RS11970 (ACBW56_11970) hxlB 2476614..2477171 (+) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  ACBW56_RS11975 (ACBW56_11975) nucA/comI 2477530..2477967 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACBW56_RS11980 (ACBW56_11980) nin/comJ 2477989..2478387 (+) 399 WP_014304317.1 competence protein ComJ Regulator
  ACBW56_RS11985 (ACBW56_11985) - 2478428..2478646 (-) 219 Protein_2354 family 1 glycosylhydrolase -
  ACBW56_RS11990 (ACBW56_11990) - 2478645..2478923 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  ACBW56_RS11995 (ACBW56_11995) - 2478865..2479140 (-) 276 WP_369719109.1 YckD family protein -
  ACBW56_RS12000 (ACBW56_12000) - 2479257..2479691 (-) 435 WP_057080003.1 RDD family protein -
  ACBW56_RS12005 (ACBW56_12005) - 2479706..2480842 (-) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  ACBW56_RS12010 (ACBW56_12010) - 2480907..2482109 (-) 1203 WP_043866820.1 GTP-binding protein -
  ACBW56_RS12015 (ACBW56_12015) - 2482262..2482387 (+) 126 Protein_2360 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1038781 ACBW56_RS11975 WP_003156588.1 2477530..2477967(+) (nucA/comI) [Bacillus velezensis strain FRI-TD24]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1038781 ACBW56_RS11975 WP_003156588.1 2477530..2477967(+) (nucA/comI) [Bacillus velezensis strain FRI-TD24]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment