Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACBW56_RS00705 Genome accession   NZ_CP167196
Coordinates   148519..149271 (+) Length   250 a.a.
NCBI ID   WP_044053500.1    Uniprot ID   -
Organism   Bacillus velezensis strain FRI-TD24     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143519..154271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBW56_RS00690 (ACBW56_00690) - 143742..143933 (-) 192 WP_003152639.1 hypothetical protein -
  ACBW56_RS00695 (ACBW56_00695) - 144386..147028 (+) 2643 WP_003152640.1 valine--tRNA ligase -
  ACBW56_RS00700 (ACBW56_00700) - 147087..148379 (+) 1293 WP_014305515.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACBW56_RS00705 (ACBW56_00705) comC 148519..149271 (+) 753 WP_044053500.1 A24 family peptidase Machinery gene
  ACBW56_RS00710 (ACBW56_00710) - 149397..150398 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  ACBW56_RS00715 (ACBW56_00715) - 150539..151108 (+) 570 WP_032856929.1 nucleoside triphosphate pyrophosphatase -
  ACBW56_RS00720 (ACBW56_00720) radC 151140..151835 (+) 696 WP_003152646.1 DNA repair protein RadC -
  ACBW56_RS00725 (ACBW56_00725) mreB 151927..152940 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACBW56_RS00730 (ACBW56_00730) mreC 152971..153834 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27182.83 Da        Isoelectric Point: 9.2521

>NTDB_id=1038734 ACBW56_RS00705 WP_044053500.1 148519..149271(+) (comC) [Bacillus velezensis strain FRI-TD24]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLTSGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1038734 ACBW56_RS00705 WP_044053500.1 148519..149271(+) (comC) [Bacillus velezensis strain FRI-TD24]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCACTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment