Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACBZ91_RS21325 Genome accession   NZ_CP167180
Coordinates   1294497..1295594 (+) Length   365 a.a.
NCBI ID   WP_372378832.1    Uniprot ID   -
Organism   Vibrio natriegens strain JSH01     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289497..1300594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS21300 (ACBZ91_21300) - 1290706..1292043 (-) 1338 WP_329354886.1 MATE family efflux transporter -
  ACBZ91_RS21305 (ACBZ91_21305) - 1292176..1292490 (-) 315 WP_020334143.1 DUF496 family protein -
  ACBZ91_RS21310 (ACBZ91_21310) - 1292882..1293085 (+) 204 WP_014233768.1 hypothetical protein -
  ACBZ91_RS21315 (ACBZ91_21315) - 1293243..1293887 (+) 645 WP_372378831.1 YceH family protein -
  ACBZ91_RS21320 (ACBZ91_21320) - 1293887..1294201 (+) 315 WP_014233770.1 GIY-YIG nuclease family protein -
  ACBZ91_RS21325 (ACBZ91_21325) luxP 1294497..1295594 (+) 1098 WP_372378832.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACBZ91_RS21330 (ACBZ91_21330) luxQ 1295594..1298167 (+) 2574 WP_372378833.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  ACBZ91_RS21335 (ACBZ91_21335) - 1298342..1298797 (+) 456 WP_014233773.1 MarR family transcriptional regulator -
  ACBZ91_RS21340 (ACBZ91_21340) - 1298831..1299889 (+) 1059 WP_014233774.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41634.94 Da        Isoelectric Point: 5.1880

>NTDB_id=1038709 ACBZ91_RS21325 WP_372378832.1 1294497..1295594(+) (luxP) [Vibrio natriegens strain JSH01]
MKKELIFSLVLVAGIAPAAHPSQVLNGYWEYQEFLKEFPEQRQLTNALAEAVREKPIPVTSDKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWDKHQPFLYVGFDHAEGSRKLAKEFSQRFPQNTHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILDGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1038709 ACBZ91_RS21325 WP_372378832.1 1294497..1295594(+) (luxP) [Vibrio natriegens strain JSH01]
ATGAAAAAAGAGTTAATATTCTCCCTTGTATTAGTAGCTGGTATTGCCCCAGCAGCACATCCATCGCAAGTCCTGAATGG
ATATTGGGAATATCAAGAGTTTCTGAAAGAATTTCCGGAGCAAAGGCAACTAACCAACGCACTGGCTGAAGCTGTTAGAG
AAAAACCGATTCCGGTGACTAGCGATAAAAAGCGTGAACTGAAGATTTCTGTCGTTTACCCAGGGCAACAAATCTCAGAT
TACTGGATCAGAAACATAGATGCTTTTGAAAAACGGTTAGATAAGCTAAATATTAACTATCAGCTCAATCAGGTTTTTAC
TCGTCCAAACGCCGATATCAAACAGCAAAGTCTGTCTTTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATCTTTA
CGCTCGATACCACCAGACATCGCAAATTTATTGAGCATGTTTTAGATTCGAAGAAAACCAAACTGATCTTACAAAACATT
ACGACACCAGTAAGAGATTGGGATAAACACCAGCCGTTTCTTTATGTTGGTTTTGACCATGCTGAAGGCAGCAGAAAACT
GGCGAAAGAGTTTAGTCAACGCTTCCCCCAAAACACTCACTACAGTGTGCTTTACTTTTCAGAAGGCTACATTAGTGATG
TAAGAGGGAACACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTCTGGACAAGTACCCTGATGTCGACTTTATTTATGCTTGCTCAACCGA
TGTCGCTCTTGGTGCCGTTGAAGCGCTAGCTGAACTCGGGCGCGATGATATTATGATTAATGGCTGGGGAGGGGGCTCTG
CAGAGCTAGACGCCATTTTAGATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACAGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATCTGGAAGGGAAGTCAGTACCAACTGTATATTCTGGTGACTATGAAGTCGTCACCACATCAGA
TTCTCCCGAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment