Detailed information NTG1038687

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACBZ91_RS10090
• Genome accession: NZ_CP167179
• Coordinates: 2174589..2175575 (-)
• Length: 328 a.a.
• NCBI ID: WP_024372915.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain JSH01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2169589..2180575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACBZ91_RS10075 (ACBZ91_10075)	recA	2170140..2171186 (-)	1047	WP_372377313.1	recombinase RecA	Machinery gene
ACBZ91_RS10080 (ACBZ91_10080)	pncC	2171377..2171868 (-)	492	WP_020333963.1	nicotinamide-nucleotide amidase	-
ACBZ91_RS10085 (ACBZ91_10085)	mutS	2171953..2174514 (+)	2562	WP_372377314.1	DNA mismatch repair protein MutS	-
ACBZ91_RS10090 (ACBZ91_10090)	rpoS	2174589..2175575 (-)	987	WP_024372915.1	RNA polymerase sigma factor RpoS	Regulator
ACBZ91_RS10095 (ACBZ91_10095)	-	2175655..2176578 (-)	924	WP_024372916.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACBZ91_RS10100 (ACBZ91_10100)	-	2176592..2177218 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACBZ91_RS10105 (ACBZ91_10105)	surE	2177218..2177964 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
ACBZ91_RS10110 (ACBZ91_10110)	truD	2177994..2179037 (-)	1044	WP_372377315.1	tRNA pseudouridine(13) synthase TruD	-
ACBZ91_RS10115 (ACBZ91_10115)	ispF	2179080..2179559 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACBZ91_RS10120 (ACBZ91_10120)	ispD	2179573..2180280 (-)	708	WP_330471387.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACBZ91_RS10125 (ACBZ91_10125)	ftsB	2180282..2180563 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37315.19 Da
• Isoelectric Point: 4.7268

>NTDB_id=1038687 ACBZ91_RS10090 WP_024372915.1 2174589..2175575(-) (rpoS) [Vibrio natriegens strain JSH01]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1038687 ACBZ91_RS10090 WP_024372915.1 2174589..2175575(-) (rpoS) [Vibrio natriegens strain JSH01]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGCTTGGCCCTTCTGGACCTTATTGAAGAAGGTAACCTTGGCTTGATCCGTGCAGTTGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACGCGTACCATT
CGTTTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATTATTCCAGATGGTAACAATTCTGAT
CCTGAAGTTTCGACACAAGATGACGATATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGTTGAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTTACTC
GTGAACGCGTTCGCCAGATCCAAGTGGAAGGTCTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAA
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.857