Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   KJP78_RS00330 Genome accession   NZ_OX419553
Coordinates   59646..59876 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis isolate NRS6183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54646..64876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS00300 (NRS6183_00310) ridA 54810..55187 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  KJP78_RS00305 (NRS6183_00315) spoVG 55382..55675 (+) 294 WP_003218346.1 septation regulator SpoVG -
  KJP78_RS00310 (NRS6183_00320) glmU 55868..57238 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KJP78_RS00315 (NRS6183_00325) prs 57261..58214 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  KJP78_RS00320 (NRS6183_00330) ctc 58299..58913 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  KJP78_RS00325 (NRS6183_00335) pth 59020..59586 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  KJP78_RS00330 (NRS6183_00340) subA/fin 59646..59876 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  KJP78_RS00335 (NRS6183_00345) mfd 59946..63479 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  KJP78_RS00340 (NRS6183_00350) spoVT 63615..64151 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=1038686 KJP78_RS00330 WP_003243417.1 59646..59876(+) (subA/fin) [Bacillus subtilis isolate NRS6183]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=1038686 KJP78_RS00330 WP_003243417.1 59646..59876(+) (subA/fin) [Bacillus subtilis isolate NRS6183]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1