Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACBZ91_RS09960 Genome accession   NZ_CP167179
Coordinates   2152447..2152965 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens strain JSH01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2147447..2157965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS09935 (ACBZ91_09935) rimM 2147529..2148077 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  ACBZ91_RS09940 (ACBZ91_09940) rpsP 2148108..2148356 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  ACBZ91_RS09945 (ACBZ91_09945) ffh 2148565..2149947 (-) 1383 WP_014232959.1 signal recognition particle protein -
  ACBZ91_RS09950 (ACBZ91_09950) - 2150172..2150966 (+) 795 WP_014232960.1 inner membrane protein YpjD -
  ACBZ91_RS09955 (ACBZ91_09955) - 2151085..2152362 (+) 1278 WP_014232961.1 HlyC/CorC family transporter -
  ACBZ91_RS09960 (ACBZ91_09960) luxS 2152447..2152965 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  ACBZ91_RS09965 (ACBZ91_09965) - 2153040..2153645 (-) 606 WP_014232963.1 hypothetical protein -
  ACBZ91_RS09970 (ACBZ91_09970) gshA 2153670..2155238 (-) 1569 WP_372377305.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=1038684 ACBZ91_RS09960 WP_014232962.1 2152447..2152965(-) (luxS) [Vibrio natriegens strain JSH01]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1038684 ACBZ91_RS09960 WP_014232962.1 2152447..2152965(-) (luxS) [Vibrio natriegens strain JSH01]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAATAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCCGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCGCCA
ATGGGATGTCGTACTGGCTTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTGAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGATGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAATTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment