Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACBZ91_RS07850 Genome accession   NZ_CP167179
Coordinates   1685112..1686473 (-) Length   453 a.a.
NCBI ID   WP_372378678.1    Uniprot ID   -
Organism   Vibrio natriegens strain JSH01     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680112..1691473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS07815 (ACBZ91_07815) moaE 1680671..1681126 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  ACBZ91_RS07820 (ACBZ91_07820) moaD 1681128..1681385 (-) 258 WP_065297101.1 molybdopterin synthase sulfur carrier subunit -
  ACBZ91_RS07825 (ACBZ91_07825) moaC 1681382..1681860 (-) 479 Protein_1524 cyclic pyranopterin monophosphate synthase MoaC -
  ACBZ91_RS07830 (ACBZ91_07830) moaB 1681888..1682400 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  ACBZ91_RS07835 (ACBZ91_07835) moaA 1682501..1683490 (-) 990 WP_372377129.1 GTP 3',8-cyclase MoaA -
  ACBZ91_RS07840 (ACBZ91_07840) - 1683797..1684693 (+) 897 WP_372377130.1 YvcK family protein -
  ACBZ91_RS07845 (ACBZ91_07845) luxU 1684771..1685115 (-) 345 WP_329350772.1 quorum-sensing phosphorelay protein LuxU -
  ACBZ91_RS07850 (ACBZ91_07850) luxO 1685112..1686473 (-) 1362 WP_372378678.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACBZ91_RS07855 (ACBZ91_07855) uvrB 1686803..1688833 (-) 2031 WP_372377131.1 excinuclease ABC subunit UvrB -
  ACBZ91_RS07865 (ACBZ91_07865) rsxA 1689819..1690397 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  ACBZ91_RS07870 (ACBZ91_07870) rsxB 1690401..1690997 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50406.46 Da        Isoelectric Point: 6.0277

>NTDB_id=1038678 ACBZ91_RS07850 WP_372378678.1 1685112..1686473(-) (luxO) [Vibrio natriegens strain JSH01]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQVWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1038678 ACBZ91_RS07850 WP_372378678.1 1685112..1686473(-) (luxO) [Vibrio natriegens strain JSH01]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGCCTGAAACATCGTATCCCCGATCTTATTCTGCTTGATCTTCGTCTGCCTGACATGA
CGGGTATGGACGTTCTGCATGCAGTGAAACAAAGTCACCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATT
GATACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGATTACGTGTCAC
GGTGAACAATGCGATACGAAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCAGCCGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGTGGTGACAAACCTTTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCTGCAGAATTAGCGGATGGCGGTACGCTTTTCCTCGATGAATTGTGTGAAATGGATTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGTTCATCAAAAATGAAAAGCGTGGATGT
ACGTTTTGTGTGTGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCGATTGAACGCGCAATTGAAGCGTGCGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGTATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859

Multiple sequence alignment