Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACBZ91_RS04165 Genome accession   NZ_CP167179
Coordinates   898274..899695 (-) Length   473 a.a.
NCBI ID   WP_372378319.1    Uniprot ID   -
Organism   Vibrio natriegens strain JSH01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 893274..904695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS04140 (ACBZ91_04140) - 893878..894528 (+) 651 WP_372378314.1 thiopurine S-methyltransferase -
  ACBZ91_RS04145 (ACBZ91_04145) purT 894621..895796 (-) 1176 WP_372378315.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACBZ91_RS04150 (ACBZ91_04150) cdd 895944..896831 (-) 888 WP_014231624.1 cytidine deaminase -
  ACBZ91_RS04155 (ACBZ91_04155) - 897162..897839 (-) 678 WP_014231625.1 LrgB family protein -
  ACBZ91_RS04160 (ACBZ91_04160) - 897841..898215 (-) 375 WP_372378316.1 CidA/LrgA family protein -
  ACBZ91_RS04165 (ACBZ91_04165) sbcB 898274..899695 (-) 1422 WP_372378319.1 exodeoxyribonuclease I Machinery gene
  ACBZ91_RS04170 (ACBZ91_04170) - 899934..900104 (+) 171 WP_372378320.1 integrase -
  ACBZ91_RS04175 (ACBZ91_04175) - 900248..900679 (+) 432 WP_372378321.1 hypothetical protein -
  ACBZ91_RS04180 (ACBZ91_04180) maoP 901111..901461 (+) 351 WP_372378322.1 DUF413 domain-containing protein -
  ACBZ91_RS04185 (ACBZ91_04185) - 901576..901929 (+) 354 WP_372378323.1 hypothetical protein -
  ACBZ91_RS04190 (ACBZ91_04190) - 902006..902380 (+) 375 WP_372378324.1 hypothetical protein -
  ACBZ91_RS04195 (ACBZ91_04195) - 902395..902976 (+) 582 WP_372378325.1 hypothetical protein -
  ACBZ91_RS04200 (ACBZ91_04200) - 903270..903785 (+) 516 WP_372378326.1 hypothetical protein -
  ACBZ91_RS04205 (ACBZ91_04205) - 903891..904619 (+) 729 WP_372378327.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54409.56 Da        Isoelectric Point: 4.8162

>NTDB_id=1038674 ACBZ91_RS04165 WP_372378319.1 898274..899695(-) (sbcB) [Vibrio natriegens strain JSH01]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1038674 ACBZ91_RS04165 WP_372378319.1 898274..899695(-) (sbcB) [Vibrio natriegens strain JSH01]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTACCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAGTTCATTGCTAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGATCCGTATGCGTGGAGTTGGCAAAACGGCAATTCGCGCTGGG
ATTTACTTGATGTACTGCGCGCTTGTCATGCTCTTCGACCAGAAGGCGTTGAGTGGCCAGAAAACGAAGATGGGTTTACC
AGCTTCAAACTCGAGCACCTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTATCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACAAGCTGGATTGTGCCCGTCGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCAATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTTTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGTTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment