Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NBRC13296_RS25540 Genome accession   NZ_CP167173
Coordinates   5639824..5640774 (-) Length   316 a.a.
NCBI ID   WP_009673533.1    Uniprot ID   A0A410X473
Organism   Paenibacillus chitinolyticus strain NBRC 13296     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5634824..5645774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBRC13296_RS25520 (NBRC13296_25520) - 5635269..5636792 (+) 1524 WP_372008815.1 MDR family MFS transporter -
  NBRC13296_RS25525 (NBRC13296_25525) - 5637040..5638005 (-) 966 WP_042234305.1 siderophore ABC transporter substrate-binding protein -
  NBRC13296_RS25530 (NBRC13296_25530) - 5638122..5638880 (-) 759 WP_042234308.1 ABC transporter ATP-binding protein -
  NBRC13296_RS25535 (NBRC13296_25535) - 5638874..5639827 (-) 954 WP_372008817.1 iron chelate uptake ABC transporter family permease subunit -
  NBRC13296_RS25540 (NBRC13296_25540) ceuB 5639824..5640774 (-) 951 WP_009673533.1 ABC transporter permease Machinery gene
  NBRC13296_RS25545 (NBRC13296_25545) - 5641498..5641995 (+) 498 WP_042234313.1 DinB family protein -
  NBRC13296_RS25550 (NBRC13296_25550) - 5642197..5642757 (+) 561 WP_372008818.1 cupin domain-containing protein -
  NBRC13296_RS25555 (NBRC13296_25555) - 5642891..5645614 (-) 2724 WP_372008820.1 alpha-mannosidase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34906.37 Da        Isoelectric Point: 10.2673

>NTDB_id=1038660 NBRC13296_RS25540 WP_009673533.1 5639824..5640774(-) (ceuB) [Paenibacillus chitinolyticus strain NBRC 13296]
MKKRYLVIALIVLSVASIFIGVKDISPLDLFNLSDDKVHILLVSRLPRLISILIAGMSMSVIGLIMQQLSRNKFVSPTTA
GTMDSARFGILVSMMLFTSAGPLEKMLIAFVFALLGTFIFMKILDRVKYKDTIFIPLVGLMFGNIVSSITTFFAYKNNLI
QNMSSWLQGDFSMVMKGRYEIMYISIPVLVIAYLYANRFTIAGMGEEFSTNLGLKYKQVVNIGLVIVALVSSVVILTVGT
LPFLGLIIPNIVTLYMGDNLKRALPHTALLGAVFVLFCDILGRIIIFPYEISIGLTVGVIGSGIFLYMLLARRKAL

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1038660 NBRC13296_RS25540 WP_009673533.1 5639824..5640774(-) (ceuB) [Paenibacillus chitinolyticus strain NBRC 13296]
ATGAAAAAGAGATATCTGGTGATCGCGCTTATCGTTTTATCCGTCGCATCGATCTTTATCGGGGTTAAAGATATCAGCCC
GTTGGATCTGTTCAACCTGAGCGACGATAAAGTCCATATCCTGCTTGTCAGCAGACTCCCCCGGTTGATCAGCATCCTGA
TCGCAGGCATGAGCATGAGTGTCATCGGCCTGATCATGCAGCAGCTGAGCCGCAATAAATTCGTGTCGCCGACTACGGCC
GGTACGATGGATTCCGCAAGATTCGGAATTCTGGTCTCGATGATGCTGTTCACTTCGGCCGGTCCGCTGGAGAAGATGCT
GATAGCCTTCGTATTCGCCTTGCTGGGAACGTTCATCTTTATGAAGATTCTCGACCGCGTGAAATACAAGGATACGATTT
TCATCCCGCTGGTGGGTCTGATGTTCGGCAACATCGTAAGCTCTATCACCACCTTTTTCGCTTACAAAAACAATCTCATT
CAGAACATGTCCTCGTGGCTGCAGGGAGATTTTTCGATGGTGATGAAGGGCCGGTACGAAATCATGTACATTTCGATCCC
GGTGCTCGTTATCGCGTATTTGTACGCCAACCGTTTTACCATTGCCGGCATGGGGGAGGAGTTCTCCACCAACCTGGGGC
TGAAATACAAGCAGGTGGTCAACATCGGGCTCGTTATCGTGGCCCTGGTATCCTCCGTGGTCATTCTGACGGTAGGTACG
CTGCCGTTCCTGGGGCTGATTATCCCGAACATCGTCACGCTCTATATGGGAGACAATCTGAAGCGGGCGCTGCCCCACAC
CGCCTTGCTCGGAGCCGTGTTCGTCCTTTTCTGCGACATTCTGGGACGGATTATCATTTTCCCGTATGAGATTTCGATCG
GGCTTACGGTCGGGGTAATCGGAAGCGGCATCTTCCTTTACATGCTGCTGGCAAGGAGAAAGGCCTTATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410X473

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.226

98.101

0.522

Multiple sequence alignment