Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NBRC13296_RS20380 Genome accession   NZ_CP167173
Coordinates   4493698..4494147 (-) Length   149 a.a.
NCBI ID   WP_129112529.1    Uniprot ID   -
Organism   Paenibacillus chitinolyticus strain NBRC 13296     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4488698..4499147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBRC13296_RS20355 (NBRC13296_20355) - 4490977..4491201 (-) 225 WP_372008045.1 spore germination protein -
  NBRC13296_RS20360 (NBRC13296_20360) - 4491409..4491837 (-) 429 WP_372008048.1 GNAT family N-acetyltransferase -
  NBRC13296_RS20365 (NBRC13296_20365) - 4491901..4492824 (-) 924 WP_217557972.1 AEC family transporter -
  NBRC13296_RS20370 (NBRC13296_20370) - 4492947..4493300 (+) 354 WP_042230110.1 hypothetical protein -
  NBRC13296_RS20375 (NBRC13296_20375) - 4493368..4493643 (-) 276 WP_042230113.1 hypothetical protein -
  NBRC13296_RS20380 (NBRC13296_20380) nucA/comI 4493698..4494147 (-) 450 WP_129112529.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NBRC13296_RS20385 (NBRC13296_20385) - 4494271..4494804 (-) 534 WP_372008052.1 DinB family protein -
  NBRC13296_RS20390 (NBRC13296_20390) - 4494905..4496269 (-) 1365 WP_372008054.1 class I SAM-dependent rRNA methyltransferase -
  NBRC13296_RS20395 (NBRC13296_20395) - 4496432..4497700 (+) 1269 WP_372008056.1 Na/Pi cotransporter family protein -
  NBRC13296_RS20400 (NBRC13296_20400) deoC 4497666..4498343 (-) 678 WP_372008058.1 deoxyribose-phosphate aldolase -
  NBRC13296_RS20405 (NBRC13296_20405) - 4498340..4498783 (-) 444 WP_372008059.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16238.63 Da        Isoelectric Point: 10.0839

>NTDB_id=1038654 NBRC13296_RS20380 WP_129112529.1 4493698..4494147(-) (nucA/comI) [Paenibacillus chitinolyticus strain NBRC 13296]
MNKKRKKNKKTASIFLFLLIVLVSVVAKSLGLFDGETGKSTSADQTIYFPSDKYPETAKHIKDAIAKGASSVCTIDRKGA
EENRRQSLAGVATKKNYDRDEWPMAMCAEGGKGADIAYIKPSDNRGAGSWIGNQLDKLPDGTRVEIVVK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1038654 NBRC13296_RS20380 WP_129112529.1 4493698..4494147(-) (nucA/comI) [Paenibacillus chitinolyticus strain NBRC 13296]
ATGAACAAAAAACGAAAGAAGAACAAGAAAACGGCCTCGATTTTTCTTTTTCTGCTGATTGTACTCGTCTCGGTCGTCGC
TAAAAGCCTCGGATTGTTCGACGGCGAGACGGGCAAGAGCACTTCTGCCGACCAGACGATCTATTTCCCGAGCGACAAGT
ATCCCGAAACCGCTAAGCACATCAAAGACGCGATTGCAAAAGGAGCTTCGTCCGTCTGCACGATCGACCGGAAGGGAGCC
GAGGAGAACCGCAGGCAGTCCCTGGCCGGTGTCGCGACCAAAAAAAATTACGACCGCGACGAATGGCCGATGGCGATGTG
CGCGGAAGGCGGCAAGGGAGCGGATATCGCTTACATCAAACCTTCGGACAACCGGGGGGCCGGATCTTGGATCGGCAATC
AGCTAGATAAACTTCCCGATGGAACGCGGGTCGAGATCGTGGTAAAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(55-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.931

77.852

0.49

Multiple sequence alignment