Detailed information NTG1038541

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: AB8803_RS25105
• Genome accession: NZ_CP167163
• Coordinates: 5502585..5503847 (-)
• Length: 420 a.a.
• NCBI ID: WP_010955626.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain KT2440
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5497585..5508847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8803_RS25090	-	5499263..5500852 (-)	1590	WP_010955623.1	SPOR domain-containing protein	-
AB8803_RS25095	aroB	5500868..5501965 (-)	1098	WP_010955624.1	3-dehydroquinate synthase	-
AB8803_RS25100	aroK	5502062..5502580 (-)	519	WP_010955625.1	shikimate kinase AroK	-
AB8803_RS25105	pilQ	5502585..5503847 (-)	1263	WP_010955626.1	type IV pilus secretin PilQ	Machinery gene
AB8803_RS25110	-	5503771..5504772 (-)	1002	WP_049588306.1	pilus assembly protein PilP	-
AB8803_RS25115	-	5504784..5505320 (-)	537	WP_010955628.1	PilN domain-containing protein	-
AB8803_RS25120	pilM	5505317..5506198 (-)	882	WP_010955629.1	type IV pilus biogenesis protein PilM	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 45687.40 Da
• Isoelectric Point: 5.0856

>NTDB_id=1038541 AB8803_RS25105 WP_010955626.1 5502585..5503847(-) (pilQ) [Pseudomonas putida strain KT2440]
MKTWMKYLLATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQDVPWDQALDLVLR
SKGLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLSVDERT
NTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAGSSIGL
GLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSFREASLSLEVTPQITPDNKV
IMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKS
ELLVFLTPRIMSDQAIAVSR

Nucleotide

• Length: 1263 bp

>NTDB_id=1038541 AB8803_RS25105 WP_010955626.1 5502585..5503847(-) (pilQ) [Pseudomonas putida strain KT2440]
ATGAAAACGTGGATGAAATACCTGTTGGCGACCCTGCTGTCGATCCCGCTGGCTTCGGCGACGCCTTACCAGGGTGAACC
CCTGTCGCTGAACTTCCAGGATGTTGAGGTGCGTGCGGTGCTGCAGGTGCTGGCTGACTACGCTGGCGTCAACCTGGTCG
CCAGTGATGCGGTACAAGGCAGTGTCACTTTGCGTTTGCAGGACGTGCCGTGGGATCAGGCGCTTGACCTGGTCCTGCGC
AGCAAGGGCCTGTCCCGGCGCCAGGAGGGCAATGTGCTGTTGGTGGCACCTGCAGCCGAGTTTGCCGCGCAATCAGCAGA
CGCCCGGGTGAGTCAGGCGCTGGATGCGCACCTGCAGCCATTGCGTCGGGAGCTGCTGCCCATTCACCACGCCAAGGCCG
CCGATCTGGCGCAGTTGCTGCTGGCAGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGCTTGAGTGTCGATGAGCGCACC
AACACGTTGGTGGTGCATCTGCCCGCTGACCGCCTGGCCGAGATGCGCCAGCTGGTGGCGCAGTTGGATGTGCCGGTGCG
CCAGGTAGCGATCGAGGCGCGTATCGTCGAGGCCAACGTCGATTATGAGAAAAGCCTGGGGGTACGCTGGGGTGGGCCGC
TGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTG
GGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGCGAAATCATTTCGCA
GCCCAAGGTGGTCACGGCTGACAAGGAAACGGCGAGGATCCTCAAGGGTACCGAGGTGCCTTACCAGGAAACGAGCCAAA
GCGGCGCTACCTCGGTATCGTTTCGCGAAGCCTCGCTGTCGCTGGAAGTAACGCCACAGATCACCCCGGACAACAAGGTG
ATCATGACCGTCAGGGTGACCAAGGACGAGCCGGATTACGTCAATGCCTTGAACAACGTACCGCCGATTCGCAAGAACGA
GGTCAATGCCAAGGTTCGTGTGGCTGACGGCGAAACGATCGTGATCGGTGGCGTCTACTCGACTTCGCAAAACAATGTGG
TCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCC
GAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

• Secretin and TonB N terminus short domain (STN) (51-97)

• Bacterial type II/III secretion system short domain (Secretin_N) (125-188)

• Bacterial type II and III secretion system protein (Secretin) (255-411)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	59.174	100	0.614
comQ	Acinetobacter baylyi ADP1	42.539	100	0.455
pilQ	Acinetobacter baumannii strain A118	41.215	100	0.452
pilQ	Acinetobacter baumannii D1279779	41.215	100	0.452
pilQ	Legionella pneumophila strain ERS1305867	43.029	99.048	0.426
pilQ	Legionella pneumophila strain Lp02	43.029	99.048	0.426
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.943	100	0.421
pilQ	Vibrio cholerae strain A1552	41.943	100	0.421
pilQ	Vibrio campbellii strain DS40M4	40.46	100	0.419
pilQ	Neisseria gonorrhoeae strain FA1090	35.765	100	0.362
pilQ	Neisseria meningitidis MC58	35.765	100	0.362
pilQ	Neisseria meningitidis M1080	35.765	100	0.362