Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACB089_RS25445 Genome accession   NZ_CP167122
Coordinates   5110201..5111577 (+) Length   458 a.a.
NCBI ID   WP_374964518.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5105201..5116577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS25425 (ACB089_25415) - 5105352..5105822 (+) 471 WP_374964511.1 CtsR family transcriptional regulator -
  ACB089_RS25430 (ACB089_25420) - 5105836..5106384 (+) 549 WP_374964512.1 UvrB/UvrC motif-containing protein -
  ACB089_RS25435 (ACB089_25425) - 5106381..5107490 (+) 1110 WP_374964514.1 protein arginine kinase -
  ACB089_RS25440 (ACB089_25430) - 5107480..5109924 (+) 2445 WP_374964516.1 ATP-dependent Clp protease ATP-binding subunit -
  ACB089_RS25445 (ACB089_25435) radA 5110201..5111577 (+) 1377 WP_374964518.1 DNA repair protein RadA Machinery gene
  ACB089_RS25450 (ACB089_25440) - 5111930..5113015 (+) 1086 WP_068985710.1 PIN/TRAM domain-containing protein -
  ACB089_RS25455 (ACB089_25445) ispD 5113028..5113720 (+) 693 WP_374967627.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACB089_RS25460 (ACB089_25450) ispF 5113963..5114439 (+) 477 WP_368637296.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACB089_RS25465 (ACB089_25455) gltX 5114531..5115991 (+) 1461 WP_374964520.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50087.88 Da        Isoelectric Point: 7.1214

>NTDB_id=1038359 ACB089_RS25445 WP_374964518.1 5110201..5111577(+) (radA) [Lysinibacillus sp. RS10]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEIEVVAKGPRGAFQHSATVTQKALPIMQIEAAEESRVATEMSELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDDVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVGATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIEIVGVETIKDALNTCFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1038359 ACB089_RS25445 WP_374964518.1 5110201..5111577(+) (radA) [Lysinibacillus sp. RS10]
TTGGCAAAGAAAAAAACGAAATTTGTATGCTCAGGCTGTGGTTATGAATCGGCAAAGTGGATGGGAAGATGTCCAGGGTG
TGGAGAATGGAATAAGATGGTTGAAGAGATAGAGGTTGTAGCTAAAGGGCCTAGAGGGGCTTTTCAACACTCCGCTACAG
TTACCCAAAAGGCTCTCCCTATTATGCAGATTGAAGCAGCTGAGGAATCACGAGTTGCAACAGAAATGAGTGAGCTCAAC
CGAGTGCTAGGTGGAGGCATCGTACCTGGTTCGCTTGTGTTAATCGGGGGAGACCCTGGGATTGGGAAGTCGACGTTATT
ATTACAAGTATCGGCTTTACTTTCTAATAAAGGACATCGTGTGCTCTATATTTCCGGTGAAGAATCAATTCGTCAAACAA
AGCTACGGGCAGAGCGTTTAGGAGTGATATCACAGGAGCTCTATATATATTCAGAAACAAATTTAGAGTTTTTAAATCAG
ACCATCGATGATGTGCAGCCTAAGTTTGTCATTGTCGATTCCATTCAAACAGTTTTTCATCCTGAGGTAACGAGTGCACC
TGGTAGTGTATCACAGGTGCGTGAATGTACAGCGGAGCTAATGCGAATTGCAAAAACAAAGGGAATCGCTATTTTTTTAG
TTGGGCATGTTACGAAAGAGGGACAAATTGCAGGGCCACGTATTTTGGAGCATATGGTTGATACGGTATTGTATTTTGAA
GGAGAACGACATCATAACCACCGTATTTTACGTAGCCAAAAAAACCGCTTTGGCTCTACTAATGAAATTGCTATTTTTGA
AATGCTTCAAGGGGGCTTAAAGGAAGTTTTAAATCCGTCTGAGTTGTTCTTGCAGGAGCGTTCACAAGGGGCGGCAGGTT
CAACAATTGTTGCCTCTATGGAAGGTACACGACCAATTCTAGTTGAAATTCAGTCGCTTGTAACACCAACAAGTTTTAAT
TATCCGAAACGAATGGCAACGGGTGTAGATCAAAACCGTGTGCAACTGCTTATGGCAGTCCTTGAAAAGAGAATGGGTCT
CATGCTACAGGCGCAGGATGCATATATTAAAGTTGCTGGCGGTGTAAAGCTTGATGAGCCTGCAATTGATTTGGCGGTGT
TGACAAGCATTGTTTCAAGCTTTAAGGATCAAGCTGTCGGAGCAACCGATTGCTTTATTGGGGAAGTAGGATTGACGGGA
GAAGTGCGTCGAGTATCTCGTATTGAACAGCGTGTCATTGAGGCAGCGAAGCTCGGATTTAAACGAGCCTTCATCCCGGC
CTCAAATATCGGCGGCTGGGATTTTCCGCAAGGTATTGAGATAGTTGGTGTAGAAACGATAAAAGATGCATTGAATACTT
GCTTTAGAGAGCTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.087

100

0.701
  radA Streptococcus pneumoniae Rx1

62.061

99.563

0.618
  radA Streptococcus pneumoniae D39

62.061

99.563

0.618
  radA Streptococcus pneumoniae R6

62.061

99.563

0.618
  radA Streptococcus pneumoniae TIGR4

62.061

99.563

0.618
  radA Streptococcus mitis NCTC 12261

62.061

99.563

0.618
  radA Streptococcus mitis SK321

62.061

99.563

0.618

Multiple sequence alignment