Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACB089_RS09260 Genome accession   NZ_CP167122
Coordinates   1806605..1808296 (+) Length   563 a.a.
NCBI ID   WP_374966151.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801605..1813296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS09235 (ACB089_09225) xseB 1802017..1802250 (+) 234 WP_053597070.1 exodeoxyribonuclease VII small subunit -
  ACB089_RS09240 (ACB089_09230) - 1802254..1803135 (+) 882 WP_374966148.1 polyprenyl synthetase family protein -
  ACB089_RS09245 (ACB089_09235) dxs 1803300..1805201 (+) 1902 WP_374966149.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACB089_RS09250 (ACB089_09240) - 1805201..1806019 (+) 819 WP_374966150.1 TlyA family RNA methyltransferase -
  ACB089_RS09255 (ACB089_09245) ahrC 1806120..1806569 (+) 450 WP_054612951.1 transcriptional regulator AhrC/ArgR -
  ACB089_RS09260 (ACB089_09250) recN 1806605..1808296 (+) 1692 WP_374966151.1 DNA repair protein RecN Machinery gene
  ACB089_RS09265 (ACB089_09255) - 1808419..1809366 (+) 948 WP_374966152.1 SpoIVB peptidase S55 domain-containing protein -
  ACB089_RS09270 (ACB089_09260) spo0A 1809723..1810514 (+) 792 WP_068984758.1 sporulation transcription factor Spo0A -
  ACB089_RS09275 (ACB089_09265) - 1810653..1811624 (+) 972 WP_374966153.1 tyrosine-type recombinase/integrase -
  ACB089_RS09280 (ACB089_09270) - 1812323..1812964 (+) 642 WP_374966154.1 hypothetical protein -
  ACB089_RS09285 (ACB089_09275) - 1813031..1813267 (-) 237 WP_374966155.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63199.80 Da        Isoelectric Point: 4.6624

>NTDB_id=1038332 ACB089_RS09260 WP_374966151.1 1806605..1808296(+) (recN) [Lysinibacillus sp. RS10]
MLRELSIRNFAIIEDLTVSFSGGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSSGHPVYKK
LEDAGIEIEEDTIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIYLLDHFAEEQLTPIQ
DSYGSQYDEYRSLKKELASISIDEQLMAQRIDLYQFQMKELEDAKLKLGEEDELLDERRRLMNFNKIFERSNAAYEAIQG
ESKGLDWIGNAMGALEDAANVDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNLKRKYGST
IEEILAYYDKIKTELNELLNRDEILQVKEQKLLKMEAVLNELAAELSTVRKAAAHNLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLLEIDTDARIEEVSRMISGAEITELTLQHATELLNMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1038332 ACB089_RS09260 WP_374966151.1 1806605..1808296(+) (recN) [Lysinibacillus sp. RS10]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATTATTGAGGATTTAACAGTTAGCTTCTCAGGTGGTTTAACTGTTTT
AACAGGTGAAACAGGTGCAGGAAAATCAATTATTATTGATGCAGTGCATTTACTTGCTGGCGGCCGAGGGAATTCTGAAT
TTATTCGTCATGGAGCTAAAAAGGCTGAATTAGGTGGTTTATTTCAAATTTCGAGTTCTGGGCATCCTGTTTATAAGAAA
CTTGAAGATGCAGGCATTGAAATTGAAGAAGATACCATTATTTTGCGCCGTGATTTAAATGATTCTGGAAAAAGTGTTTG
TCGTGTAAACGGTAAGCTTGTGCCATTGTCTGTATTACGTGATATTGGAGCTAGCCTCATCGATATTCATGGACAGCATG
AAAATCAAGAACTCATGGATGAGAAACAGCATATCTATTTGCTTGACCACTTTGCCGAGGAACAACTTACACCAATTCAA
GATTCGTACGGTTCCCAGTATGATGAATATCGTTCACTAAAAAAAGAATTAGCTTCGATTTCGATTGATGAACAGTTAAT
GGCGCAGCGTATTGATTTGTACCAGTTCCAAATGAAAGAGCTAGAGGATGCCAAATTAAAGCTTGGCGAGGAAGATGAGC
TTCTTGATGAACGTCGCCGTCTTATGAATTTCAATAAGATTTTCGAACGTTCAAATGCAGCGTATGAAGCTATTCAAGGT
GAATCAAAAGGCCTTGACTGGATTGGCAATGCAATGGGTGCCTTAGAGGATGCTGCAAACGTTGATGAGCAATTTAAAGA
GGCTTCAGAATCTGTCACCACTGCATTTTATGCGTTACAGGATGCAGCTTACCAGGTTAAAAATGTGTTAGACGAATTAG
AATTTGATCCTGCACGTTTAAATGAGGTGGAGCAACGTTTAGCCTTATTACAAAATTTGAAGCGCAAATATGGTTCAACA
ATCGAAGAGATATTAGCGTATTACGATAAAATTAAAACAGAGCTAAATGAGCTCTTAAATCGCGATGAAATTTTGCAAGT
AAAAGAACAAAAATTACTGAAAATGGAAGCGGTGCTAAATGAGCTTGCTGCAGAACTTTCGACTGTACGAAAAGCTGCTG
CACATAATTTAAGTGAAGCTATTATGGCTGAACTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTTAATTTTGAT
GAATTGCCTTATTTTGATGCGAATGGTAAAGACCAAGTAATTTTCTATATTTCTACGAATGTAGGAGAGCCACCAAAATC
TTTACCGAAAATTGCTTCTGGAGGAGAGTTATCGCGTATGATGCTTGCACTAAAGACGATTTTCTCTTCCTCTAATGGCA
TAACGTCTATTATTTTTGATGAGGTAGATACAGGTGTAAGCGGTCGTGTAGCGCAAGCGATTGCAGAAAAAATTGCAGCA
ATATCCATCAACTCCCAAGTTTTGTGTATTTCGCATTTACCACAAGTGGCTGCGATGGCAGATCACCATTATTTTATTAA
AAAAGAAGTCGAACATGATCGAACATTTACGTCATTGCTGGAAATAGATACAGATGCACGTATTGAAGAAGTAAGCCGGA
TGATATCTGGAGCAGAAATTACAGAGTTAACATTGCAGCACGCTACAGAGCTGTTAAATATGGCTAATGAACGAAAAAAA
CAAATGAGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.962

100

0.54

Multiple sequence alignment