Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACB089_RS01335 Genome accession   NZ_CP167122
Coordinates   239311..240261 (+) Length   316 a.a.
NCBI ID   WP_068984916.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 234311..245261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS01315 (ACB089_01315) - 234806..235951 (+) 1146 WP_374964914.1 M20 peptidase aminoacylase family protein -
  ACB089_RS01320 (ACB089_01320) - 235951..236775 (+) 825 WP_374964915.1 GNAT family N-acetyltransferase -
  ACB089_RS01325 (ACB089_01325) menC 236798..237904 (+) 1107 WP_374964917.1 o-succinylbenzoate synthase -
  ACB089_RS01330 (ACB089_01330) - 237982..239034 (+) 1053 WP_374964918.1 hypothetical protein -
  ACB089_RS01335 (ACB089_01335) ceuB 239311..240261 (+) 951 WP_068984916.1 ABC transporter permease Machinery gene
  ACB089_RS01340 (ACB089_01340) - 240254..241207 (+) 954 WP_368637575.1 iron chelate uptake ABC transporter family permease subunit -
  ACB089_RS01345 (ACB089_01345) - 241204..241965 (+) 762 WP_068984914.1 ABC transporter ATP-binding protein -
  ACB089_RS01350 (ACB089_01350) - 242031..243041 (+) 1011 WP_374964921.1 siderophore ABC transporter substrate-binding protein -
  ACB089_RS01355 (ACB089_01355) - 243043..243357 (+) 315 WP_374964922.1 antibiotic biosynthesis monooxygenase family protein -
  ACB089_RS01360 (ACB089_01360) - 243621..244271 (-) 651 WP_374964924.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34834.13 Da        Isoelectric Point: 9.9642

>NTDB_id=1038322 ACB089_RS01335 WP_068984916.1 239311..240261(+) (ceuB) [Lysinibacillus sp. RS10]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFESEETRLFLISRIPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGILISMMFFSNVTYFQKITFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLMMKGRYELLYISVPVLIIAYMYANRFTVAGMGEDFAKNLGLSYKFVMNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLICDIIGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1038322 ACB089_RS01335 WP_068984916.1 239311..240261(+) (ceuB) [Lysinibacillus sp. RS10]
ATGAAAATAAGATATCTTTTAACAGCAACTGTAGTGTTGTCAATTGTGTCACTATTTATCGGTGTAGTAGATATTAAACC
TAGCGACCTTTTAGACTTCGAATCAGAAGAAACTAGACTATTCTTAATTAGTCGTATACCGAGACTTGTAGCAATTTTGT
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACAACAGCA
GGTACTTTAGATGCTACTAAGTTGGGTATACTAATTTCGATGATGTTTTTCTCAAATGTCACGTATTTTCAAAAAATTAC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTGTTTATGCAAATATTAAATCGAATAAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATCCTTTCGTCGATTACAACGTTCTTTGCGTATAAGGCGGATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATGATGAAAGGTCGTTATGAGCTTTTATACATAAGTGTACC
CGTGCTGATTATAGCTTACATGTATGCGAATCGCTTCACAGTGGCTGGAATGGGGGAGGATTTTGCAAAAAACCTTGGTC
TCTCCTATAAATTCGTTATGAATTTAGGTTTAGTGCTAGTAGCACTTATTTCAACGACAGTGGTACTTACTGTTGGCGTG
ATTCCATTCCTTGGTTTAATCATTCCCAATATAATTTCCTTGTTCAAAGGGGATAATCTCGCTAAGACATTGCCTCATAC
AGCGTTACTCGGGATGTCTTTCTTATTAATATGTGACATTATAGGGCGTGTACTGATTTTCCCTTATGAAATTCCAATTA
GTATGACGGTAGGCGTCATCGGAAGTGCGATCTTCCTATTTATGTTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

100

0.541

Multiple sequence alignment