Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACB088_RS14870 Genome accession   NZ_CP167121
Coordinates   3143130..3143456 (-) Length   108 a.a.
NCBI ID   WP_092709580.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3138130..3148456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS14850 (ACB088_14850) - 3138226..3138855 (-) 630 WP_092709570.1 FHA domain-containing protein -
  ACB088_RS14855 (ACB088_14855) gspD 3138897..3141173 (-) 2277 WP_375037321.1 type II secretion system secretin GspD -
  ACB088_RS14860 (ACB088_14860) - 3141215..3142051 (-) 837 WP_375037322.1 type II secretion system protein N -
  ACB088_RS14865 (ACB088_14865) gspN 3142054..3142797 (-) 744 WP_092709578.1 type II secretion system protein N -
  ACB088_RS14870 (ACB088_14870) hns 3143130..3143456 (-) 327 WP_092709580.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACB088_RS14875 (ACB088_14875) - 3143651..3144091 (-) 441 WP_375037323.1 acyl-CoA thioesterase -
  ACB088_RS14880 (ACB088_14880) - 3144099..3145292 (-) 1194 WP_375037324.1 heme biosynthesis protein HemY -
  ACB088_RS14885 (ACB088_14885) - 3145302..3146144 (-) 843 WP_375037325.1 hypothetical protein -
  ACB088_RS14890 (ACB088_14890) - 3146153..3146920 (-) 768 WP_375037326.1 uroporphyrinogen-III synthase -
  ACB088_RS14895 (ACB088_14895) hemC 3146924..3147841 (-) 918 WP_307013456.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12448.14 Da        Isoelectric Point: 5.3496

>NTDB_id=1038296 ACB088_RS14870 WP_092709580.1 3143130..3143456(-) (hns) [Acinetobacter sp. RW6]
MKPDISELSVEELKRLQAEAEALIVSKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1038296 ACB088_RS14870 WP_092709580.1 3143130..3143456(-) (hns) [Acinetobacter sp. RW6]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGTTTACAAGCAGAAGCTGAAGCTTTAATTGTAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATCGAGATCGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATTCTGAA
GAGACTTGGACTGGCCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

97.222

100

0.972

Multiple sequence alignment