Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACB088_RS14365 Genome accession   NZ_CP167121
Coordinates   3031250..3033478 (+) Length   742 a.a.
NCBI ID   WP_375037280.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3026250..3038478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS14335 (ACB088_14335) - 3027754..3028092 (-) 339 WP_003654647.1 tRNA-binding protein -
  ACB088_RS14340 (ACB088_14340) - 3028335..3028598 (+) 264 WP_375037279.1 DUF2798 domain-containing protein -
  ACB088_RS14345 (ACB088_14345) - 3028663..3029007 (-) 345 WP_003654643.1 hypothetical protein -
  ACB088_RS14350 (ACB088_14350) gspG 3029276..3029758 (-) 483 WP_373456848.1 type II secretion system major pseudopilin GspG -
  ACB088_RS14355 (ACB088_14355) - 3029794..3029872 (-) 79 Protein_2812 type II secretion system protein GspG -
  ACB088_RS14360 (ACB088_14360) gspF 3029896..3031101 (-) 1206 WP_133747558.1 type II secretion system inner membrane protein GspF -
  ACB088_RS14365 (ACB088_14365) priA 3031250..3033478 (+) 2229 WP_375037280.1 primosomal protein N' Machinery gene
  ACB088_RS14370 (ACB088_14370) - 3033555..3035399 (+) 1845 WP_375037281.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACB088_RS14375 (ACB088_14375) - 3035565..3036440 (+) 876 WP_003654635.1 Hsp33 family molecular chaperone HslO -
  ACB088_RS14380 (ACB088_14380) - 3036580..3037191 (+) 612 WP_375037282.1 LysE family translocator -
  ACB088_RS14385 (ACB088_14385) - 3037338..3038294 (+) 957 WP_375037283.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84106.97 Da        Isoelectric Point: 8.5633

>NTDB_id=1038292 ACB088_RS14365 WP_375037280.1 3031250..3033478(+) (priA) [Acinetobacter sp. RW6]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTEAQYERAQVGSRVAISFGRQNLIGIITEKVNPHEPFTGNFQLKAISELL
DEQPILDEQVLSLLTWSAQYYQFPVGEVMQTALPAILRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALEKKGLVECTLEPHDFSPTPVQLAQMPLTLNEDQKQATQQVIKAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTSLQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1038292 ACB088_RS14365 WP_375037280.1 3031250..3033478(+) (priA) [Acinetobacter sp. RW6]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCGAAGCACAATATGAACGGGCTCAAGTAGGCTCACGCGTCGCTATTTCATTTGGGCGACAAAACCTAA
TTGGTATCATCACTGAAAAAGTGAATCCACATGAGCCATTTACAGGCAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAACAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAGTTGGCGA
GGTCATGCAAACCGCCCTTCCGGCTATACTACGTCAGGGCAAACCGATGGACGTTTTGTTCCATCTCTGGAAAATTACTC
CATGCGACAATGTTGAGGCACTGCTTAAACGTTCAGTAAAGCAACAAGATGCTTATCAGATTTTAAAGTTACATCCGGCT
GGAACAACAGAGAACATTCTCAATTTAAGTGGCGTAGAAACTGCAACACTTAAAGCGCTAGAAAAGAAAGGTTTGGTTGA
ATGTACGCTTGAACCACACGACTTTAGCCCTACACCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGCAAGCAACCCAACAGGTTATTAAAGCACAGCATCAATACCAAGCATTTTTGCTAGATGGCTTAACGGGGAGCGGTAAA
ACCGAAGTTTATCTACACATCATGCATGAGGTGCTAAAGCAAGGTAAACAAGTACTGGTTTTGGTGCCAGAAATTGGTTT
AACCCCTCAAACCATTTCTCGTTTTAAGTCTCGTTTTAATTGTGATATTGCACTGTTACATTCAGGCTTAAACGACTCCA
AACGCTTACAAGCATGGCAACAGGCACAGACTGGAAAAGCATCTATTATTTTAGGGACACGCTCAGCGATCTATACACCG
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAGCATGACCTGTCTTATAAACAACAAGAAGGCTTCCGTTACCATGC
GCGTGATGTCGCACTGTACCGAGGGCACTTACAAAGCTGCCCTGTTATTTTAGGTTCGGCAACACCAAGTATCGATAGTT
ATTATTTGGTCGAAACTGGCAAGTTAACTTCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTCTTATTGAACAAATCAAACATACATTAGCGAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCCGTACTGGTCTGCGAAAGCTGTGGATGGCAAGCCA
ATTGTCCACATTGTGATGCACATTTTACTCTGCACACCCAACCTTATTCTTATTTACATTGCCATCACTGCGGAACCATT
CATCGCTTACCGGATCATTGCCCTGAATGTCAGCAAAAGAGTTTAAAAACTTTAGGTGCAGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCTGATCATGACGTAATTCGGGTTGATCGTGATAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCAAAAGGTCACCATTTCCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCAGGGTTACTTAGTGTCGATATCCGTGCACCAGAACGTACTGCGCA
ATTGATTGTTCAAGTGGCTGGCCGTGCAGGCCGTGGTGAACACAAAGGCCATGTTTATTTACAAACCTTAAGACCCGATC
ACCCACTCCTAACCACACTCATCGAAAAAGACTATCGCGCGGTTGCCAAACAAACATTGGCTGAACGTAAAGTTGCTTTG
CTACCGCCTTATCGCTATGCCGTACTCATACGTGCAGAGTCGAAAGATCGAGACTATACCTTGCATTTTTTAAATGAAGC
TGCTGAGCAACTTCGCCAAGTTGCAGGTGAGATTGTTGATATTTGGGGACCAATCCCAGCACCGATGGAACGTAAAGCAG
GACGCTATCGTGCACACATGGTGATTTTATCTGCCGACCGCGCTCGTCTACATTTTTACTTAAGACAGTGGTGGTCTCAA
TTGGTTCATGCACCAAGGCAGCATCAACTCAGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

95.957

100

0.96

Multiple sequence alignment