Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QNH80_RS07530 Genome accession   NZ_OX352996
Coordinates   1540781..1541563 (-) Length   260 a.a.
NCBI ID   WP_024405850.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_dhsdS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1535781..1546563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH80_RS07515 purC 1538711..1539418 (-) 708 WP_011921646.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  QNH80_RS07520 - 1539536..1539784 (-) 249 WP_011921645.1 phosphopantetheine-binding protein -
  QNH80_RS07525 plsX 1539777..1540784 (-) 1008 WP_011921644.1 phosphate acyltransferase PlsX -
  QNH80_RS07530 recO 1540781..1541563 (-) 783 WP_024405850.1 DNA repair protein RecO Machinery gene
  QNH80_RS07535 - 1541550..1542728 (-) 1179 WP_024405849.1 pyridoxal phosphate-dependent aminotransferase -
  QNH80_RS07540 - 1542815..1543783 (-) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  QNH80_RS07545 - 1543886..1545142 (-) 1257 WP_012774880.1 CHAP domain-containing protein -
  QNH80_RS07550 mreD 1545227..1545742 (-) 516 WP_002935339.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.95 Da        Isoelectric Point: 5.4231

>NTDB_id=1038263 QNH80_RS07530 WP_024405850.1 1540781..1541563(-) (recO) [Streptococcus suis isolate 861160_dhsdS]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYGDFIVKINDEGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1038263 QNH80_RS07530 WP_024405850.1 1540781..1541563(-) (recO) [Streptococcus suis isolate 861160_dhsdS]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGACGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGGGGATTTTATCGTTAAAATCAATGATGAAGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATTAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCCATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665

Multiple sequence alignment