Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB9L15_RS22845 Genome accession   NZ_CP167119
Coordinates   4574440..4575390 (+) Length   316 a.a.
NCBI ID   WP_008175177.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain LS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4569440..4580390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L15_RS22825 (AB9L15_22830) - 4569964..4571109 (+) 1146 WP_036121158.1 M20 peptidase aminoacylase family protein -
  AB9L15_RS22830 (AB9L15_22835) - 4571109..4571933 (+) 825 WP_008175180.1 GNAT family N-acetyltransferase -
  AB9L15_RS22835 (AB9L15_22840) menC 4571955..4573061 (+) 1107 WP_043989909.1 o-succinylbenzoate synthase -
  AB9L15_RS22840 (AB9L15_22845) - 4573102..4574154 (+) 1053 WP_008175178.1 hypothetical protein -
  AB9L15_RS22845 (AB9L15_22850) ceuB 4574440..4575390 (+) 951 WP_008175177.1 ABC transporter permease Machinery gene
  AB9L15_RS22850 (AB9L15_22855) - 4575383..4576336 (+) 954 WP_008175176.1 iron chelate uptake ABC transporter family permease subunit -
  AB9L15_RS22855 (AB9L15_22860) - 4576333..4577094 (+) 762 WP_008175175.1 ABC transporter ATP-binding protein -
  AB9L15_RS22860 (AB9L15_22865) - 4577160..4578179 (+) 1020 WP_008175172.1 siderophore ABC transporter substrate-binding protein -
  AB9L15_RS22865 (AB9L15_22870) - 4578181..4578495 (+) 315 WP_008175171.1 antibiotic biosynthesis monooxygenase -
  AB9L15_RS22870 (AB9L15_22875) - 4578600..4579139 (-) 540 WP_089985783.1 hypothetical protein -
  AB9L15_RS22875 (AB9L15_22880) - 4579478..4580380 (+) 903 WP_375105856.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34840.05 Da        Isoelectric Point: 10.1462

>NTDB_id=1038256 AB9L15_RS22845 WP_008175177.1 4574440..4575390(+) (ceuB) [Lysinibacillus fusiformis strain LS1]
MKIRYLLTATVVLSIVSLFIGVVDIKPFDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMYGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLVMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1038256 AB9L15_RS22845 WP_008175177.1 4574440..4575390(+) (ceuB) [Lysinibacillus fusiformis strain LS1]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATAGTATCGCTATTTATCGGAGTAGTAGATATTAAACC
ATTTGATCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCTATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTATCACCAACGACAGCA
GGTACTTTAGATGCCACTCGACTGGGTGTATTGATTTCCATGATGTTTTTCACAAATGTCACGTATTTCCAGAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTATTTATGCAAATATTAAATCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTATGGTAATATCCTGTCTTCCGTAACAACGTTCTTTGCTTATAAGGCAAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACATAAGTGTACC
AGTACTTATTTTAGCTTATATTTATGCCAATCGTTTTACAGTAGCTGGTATGGGTGAGGATTTTGCTAAAAATCTTGGTC
TATCCTATAAGTTTGTGGTGAATTTAGGCTTAGTATTGGTGGCTCTTATCTCCACAACAGTGGTGCTAACAGTCGGTGTC
ATTCCATTCCTTGGCTTGATCATACCGAATATTATTTCACTGTTTAAAGGTGACAATTTGGCAAAAACATTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGCGTACTGATTTTCCCTTATGAGATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTAGTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522

Multiple sequence alignment