Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB9L15_RS06570 Genome accession   NZ_CP167119
Coordinates   1264433..1266124 (+) Length   563 a.a.
NCBI ID   WP_375106228.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain LS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259433..1271124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L15_RS06545 (AB9L15_06545) xseB 1259850..1260083 (+) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -
  AB9L15_RS06550 (AB9L15_06550) - 1260087..1260968 (+) 882 WP_008179901.1 polyprenyl synthetase family protein -
  AB9L15_RS06555 (AB9L15_06555) dxs 1261130..1263031 (+) 1902 WP_375106227.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB9L15_RS06560 (AB9L15_06560) - 1263031..1263849 (+) 819 WP_008179905.1 TlyA family RNA methyltransferase -
  AB9L15_RS06565 (AB9L15_06565) ahrC 1263950..1264399 (+) 450 WP_008179906.1 transcriptional regulator AhrC/ArgR -
  AB9L15_RS06570 (AB9L15_06570) recN 1264433..1266124 (+) 1692 WP_375106228.1 DNA repair protein RecN Machinery gene
  AB9L15_RS06575 (AB9L15_06575) - 1266246..1267193 (+) 948 WP_008179909.1 SpoIVB peptidase S55 domain-containing protein -
  AB9L15_RS06580 (AB9L15_06580) spo0A 1267587..1268378 (+) 792 WP_008179911.1 sporulation transcription factor Spo0A -
  AB9L15_RS06585 (AB9L15_06585) - 1268576..1268761 (+) 186 WP_008179914.1 hypothetical protein -
  AB9L15_RS06590 (AB9L15_06590) - 1269095..1270666 (+) 1572 WP_008179917.1 DUF342 domain-containing protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63538.38 Da        Isoelectric Point: 4.6249

>NTDB_id=1038229 AB9L15_RS06570 WP_375106228.1 1264433..1266124(+) (recN) [Lysinibacillus fusiformis strain LS1]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISNSTHPVLKK
LEEAGIEIEEETVILRRDLNDSGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKQHINLLDQFAEEQLLPIQ
KTYSEQYEEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLRLGEEDELLDERRRLMNYNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALDDAATVDEQFKEASEAVTSAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDILAYFEKIKIELNELLNRDEILQVKERRVLEMESVLNELATELSIVRKAAAQQLSEAIMAELRELHMEKAKFIVNFE
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDIGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQKARIEEVSRMMSGTEITALTLQHATELLTMAEERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1038229 AB9L15_RS06570 WP_375106228.1 1264433..1266124(+) (recN) [Lysinibacillus fusiformis strain LS1]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACTGTGAGTTTTTCAGAAGGTTTGACTGTACT
AACGGGGGAAACTGGTGCTGGTAAATCTATTATCATTGATGCTGTTCATTTACTTGCTGGTGGACGGGGAAATACTGAAT
TTATTCGTCATGGGGCAAGAAAGGCTGAATTAGGTGGCTTATTTCAAATTTCGAATTCCACGCATCCTGTGCTGAAAAAA
TTAGAAGAAGCAGGCATTGAGATTGAAGAAGAGACAGTTATTTTACGTCGTGATTTAAATGATTCTGGGAAAAGTATTTG
CCGTGTAAATGGTAAACTTGTGCCATTATCAGTACTGAGAGAAATTGGTGGGAGTCTCATTGATATTCATGGCCAACATG
AAAACCAAGAGCTGATGGATGAAAAACAGCATATCAATTTACTCGACCAGTTTGCAGAAGAGCAGCTGCTACCTATTCAA
AAAACATACAGCGAACAATATGAAGAATATCGATTGCTGAAAAAGGACTTAGCCTCGATTTCCATCGATGAACAATTAAT
GGCACAACGCATTGATTTGTATCAATTCCAAATAAAAGAGCTAGAAGAAGCCAATTTAAGGCTAGGTGAGGAAGATGAAC
TTCTTGATGAACGCCGTCGTCTCATGAATTATAATAAAATTTTTGAACGTTCTAGTGCTGCCTATGAGGCCATTCAGGGA
GAATCAAAAGGTCTTGATTGGATTGGGAATGCAATGGGTGCTTTGGATGATGCAGCAACAGTTGACGAGCAATTTAAAGA
AGCTTCTGAGGCAGTGACATCGGCTTTTTATGCGCTACAAGATGCGGCTTATCAGGTCAAAAATGTATTAGATGAATTGG
AGTTTGATCCAGCGCGTTTAAATGAGGTAGAACAACGATTAGCACTATTCCAAAATTTAAAACGCAAATATGGTTCGACT
GTGGAGGACATTTTAGCGTATTTTGAAAAAATAAAAATAGAGTTAAATGAACTGCTAAATCGCGATGAAATTTTGCAGGT
GAAAGAACGAAGAGTGCTTGAAATGGAATCGGTTCTTAATGAGCTTGCTACAGAACTTTCAATTGTGCGTAAAGCTGCTG
CCCAACAGTTAAGTGAAGCCATTATGGCAGAGTTACGGGAATTACATATGGAAAAAGCTAAATTTATTGTCAATTTTGAA
GAATTACCATATTTCGATGCAAATGGAAAAGATCAAATTATTTTTTATATTTCTACCAATGTTGGAGAACCGCCAAAGTC
CTTACCGAAAATTGCCTCGGGAGGAGAATTATCACGAATGATGCTGGCGCTGAAAACTATTTTCTCTTCTTCTAATGGTA
TCACATCCATCATTTTTGATGAAGTGGACATAGGAGTTAGTGGAAGAGTGGCACAAGCCATTGCAGAAAAAATTGCTGCG
GTATCCATTAATTCTCAAGTGCTATGTATTTCACATTTACCTCAAGTAGCTGCGATGGCTGATCATCATTACTTCATTAA
GAAAGAAGTCGAGCATGATCGAACATTTACGTCTTTATCAGAAATTGATCAAAAGGCACGAATTGAAGAAGTCAGCCGTA
TGATGTCTGGAACAGAAATTACGGCTTTAACACTACAGCATGCAACGGAGTTATTAACAATGGCAGAAGAGCGTAAAAAG
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.033

100

0.544

Multiple sequence alignment