Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   QNH71_RS08005 Genome accession   NZ_OX352941
Coordinates   1646016..1646465 (-) Length   149 a.a.
NCBI ID   WP_012027921.1    Uniprot ID   G9CHX9
Organism   Streptococcus suis isolate 861160_WT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641016..1651465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH71_RS07985 - 1641451..1641982 (-) 532 Protein_1568 histidine phosphatase family protein -
  QNH71_RS07990 - 1641987..1642430 (-) 444 WP_074390173.1 dUTP diphosphatase -
  QNH71_RS07995 rcrQ 1642532..1644316 (-) 1785 WP_024417148.1 ABC transporter ATP-binding protein Regulator
  QNH71_RS08000 - 1644317..1646023 (-) 1707 WP_024417147.1 ABC transporter ATP-binding protein -
  QNH71_RS08005 rcrR 1646016..1646465 (-) 450 WP_012027921.1 MarR family transcriptional regulator Regulator
  QNH71_RS08010 - 1646687..1647703 (+) 1017 WP_024381196.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  QNH71_RS08015 galU 1647748..1648647 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QNH71_RS08020 - 1648665..1649342 (-) 678 WP_074390172.1 rhomboid family intramembrane serine protease -
  QNH71_RS08025 - 1649326..1649868 (-) 543 WP_024381198.1 5-formyltetrahydrofolate cyclo-ligase -
  QNH71_RS08030 - 1649909..1651036 (-) 1128 WP_024381199.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17284.90 Da        Isoelectric Point: 8.9142

>NTDB_id=1038060 QNH71_RS08005 WP_012027921.1 1646016..1646465(-) (rcrR) [Streptococcus suis isolate 861160_WT]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1038060 QNH71_RS08005 WP_012027921.1 1646016..1646465(-) (rcrR) [Streptococcus suis isolate 861160_WT]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTCAATCAGATTGAACAAATTAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGCTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAGATATGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGACTTGGTTAAACAGGTGGGCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9CHX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416

Multiple sequence alignment