Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QNH71_RS07995 Genome accession   NZ_OX352941
Coordinates   1642532..1644316 (-) Length   594 a.a.
NCBI ID   WP_024417148.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_WT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637532..1649316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH71_RS07965 - 1637869..1638315 (-) 447 WP_074390175.1 LytTR family DNA-binding domain-containing protein -
  QNH71_RS07970 - 1638493..1639251 (-) 759 WP_002939965.1 TIGR00266 family protein -
  QNH71_RS07975 - 1639459..1639953 (-) 495 WP_024403073.1 carbonic anhydrase -
  QNH71_RS07980 radA 1640077..1641444 (-) 1368 WP_074390174.1 DNA repair protein RadA Machinery gene
  QNH71_RS07985 - 1641451..1641982 (-) 532 Protein_1568 histidine phosphatase family protein -
  QNH71_RS07990 - 1641987..1642430 (-) 444 WP_074390173.1 dUTP diphosphatase -
  QNH71_RS07995 rcrQ 1642532..1644316 (-) 1785 WP_024417148.1 ABC transporter ATP-binding protein Regulator
  QNH71_RS08000 - 1644317..1646023 (-) 1707 WP_024417147.1 ABC transporter ATP-binding protein -
  QNH71_RS08005 rcrR 1646016..1646465 (-) 450 WP_012027921.1 MarR family transcriptional regulator Regulator
  QNH71_RS08010 - 1646687..1647703 (+) 1017 WP_024381196.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  QNH71_RS08015 galU 1647748..1648647 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 66110.18 Da        Isoelectric Point: 5.3962

>NTDB_id=1038059 QNH71_RS07995 WP_024417148.1 1642532..1644316(-) (rcrQ) [Streptococcus suis isolate 861160_WT]
MKTLRFFWFYFKRYKLSFAVIFLAIVAATYLQVKTPVFLGNAIAEMGKIGQAYFAAEQIGQSGFKPDLSDFNGVMLNLFF
AYAATVVASLIYTLLFTRIVAHSTNRMRKGLFGKLERLTVAFFDSHKDGDILSRFTSDLDNIQNAFNQSLTQVVTNIALY
VGMVIMMFRQDTRLALVTIASTPVALIALVVIIRLSRKYTDKQQAAVSKLNAYMDEKISGQKAIIVQGVQEETIDGFLEL
NEEVRRTTFKGRLFGGILFPFMNGMSLVNTAIVIFAGSSIVLNDSSLETAAALGLVVTFVQYSQQYYQPIMQIASSWAEL
QLAFTGAHRIQEMFDEPEEVRAQNAPLFTELKEGVEIKDIDFGYLPGQKVLDKVSISAPKGKMVAVVGPTGSGKTTIMNL
INRFYDVNGGSVAFDGRDIREYDLDSLRDKVGIVLQESVLFSGTIADNIRFGDESISQEMVETAARATHIHDFIMSLPEG
YETFVTDDENVFSTGQKQLISIARTLLTDPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRTSFVIAHRLKTILNADEII
VLKDGKVIEQGNHSQLLKLNGFYAELYHNQFVFE

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=1038059 QNH71_RS07995 WP_024417148.1 1642532..1644316(-) (rcrQ) [Streptococcus suis isolate 861160_WT]
ATGAAAACACTTAGATTTTTCTGGTTTTATTTTAAACGCTATAAACTGTCCTTTGCTGTGATTTTTCTAGCCATTGTGGC
AGCGACCTACCTGCAGGTTAAGACACCTGTTTTCCTTGGAAATGCCATTGCGGAGATGGGGAAAATTGGTCAGGCTTATT
TTGCTGCAGAGCAGATAGGGCAGTCAGGTTTCAAACCTGACCTGTCTGATTTTAACGGGGTTATGCTCAATCTTTTCTTT
GCCTATGCGGCGACGGTTGTGGCTTCCTTGATTTACACTCTCCTCTTCACGCGTATCGTGGCTCATTCGACCAACCGTAT
GCGTAAGGGCTTATTTGGCAAGCTGGAACGTTTGACAGTTGCCTTCTTTGATAGCCACAAGGACGGGGATATTCTTTCTC
GCTTTACCAGTGATTTGGACAATATCCAAAACGCTTTTAACCAGTCCTTGACCCAAGTGGTGACCAACATTGCCCTTTAT
GTCGGTATGGTTATTATGATGTTCCGTCAGGATACTCGCTTGGCCTTGGTGACCATTGCTTCTACGCCAGTTGCCTTGAT
TGCCTTGGTCGTTATCATCCGCCTATCACGGAAATATACTGATAAGCAACAGGCTGCGGTATCTAAGCTTAATGCATACA
TGGATGAGAAGATTTCCGGACAAAAAGCGATTATTGTACAAGGTGTGCAGGAAGAGACAATTGATGGTTTCTTGGAACTC
AATGAAGAAGTTCGTCGTACGACCTTCAAGGGACGCTTGTTTGGTGGGATTCTCTTCCCATTTATGAATGGGATGAGTTT
GGTCAATACGGCCATTGTTATCTTTGCAGGCTCCAGCATTGTTCTCAACGATAGCTCGCTGGAAACAGCTGCCGCACTTG
GTCTGGTCGTGACCTTTGTTCAATATTCGCAACAGTATTACCAGCCTATCATGCAGATTGCCTCTAGCTGGGCAGAATTG
CAGTTGGCTTTCACAGGTGCTCACCGTATTCAGGAAATGTTTGATGAGCCTGAGGAAGTTCGTGCTCAAAACGCTCCGCT
ATTTACCGAATTAAAAGAAGGTGTTGAAATTAAGGACATCGACTTTGGCTACCTGCCGGGTCAGAAGGTCTTGGACAAGG
TGTCAATCTCTGCTCCTAAGGGCAAAATGGTGGCGGTCGTTGGTCCGACAGGATCTGGTAAGACTACCATTATGAACTTG
ATTAACCGCTTCTACGATGTCAATGGTGGTAGTGTGGCCTTTGATGGTCGCGATATTCGGGAATATGATTTGGATAGCTT
GCGGGATAAGGTCGGTATCGTCTTGCAGGAGTCGGTGCTATTCTCGGGTACTATTGCGGACAATATCCGCTTTGGTGATG
AGAGCATTTCGCAGGAAATGGTGGAAACCGCAGCCCGTGCCACCCATATCCACGACTTTATCATGAGCTTGCCAGAGGGC
TATGAGACCTTTGTGACCGATGATGAGAATGTCTTCTCAACAGGTCAGAAGCAGCTGATTTCCATTGCCCGTACGCTCTT
GACAGATCCACAAGTCTTGATTCTGGACGAAGCAACGTCTAACGTTGATACCGTAACGGAAGCCAAAATTCAAAAGGCCA
TGGAGGCCATTATCGCTGGACGGACCAGCTTCGTCATTGCCCACCGCCTCAAAACCATTCTCAATGCGGACGAAATCATC
GTCCTCAAAGATGGAAAAGTGATTGAGCAAGGCAACCACAGCCAGCTCCTCAAACTCAATGGCTTCTACGCCGAACTCTA
CCACAACCAGTTTGTGTTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-307)

ABC transporter (ABC_tran)

(371-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.457

98.822

0.36

Multiple sequence alignment