Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ACB339_RS00340 Genome accession   NZ_CP167023
Coordinates   54234..54332 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 3     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49234..59332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB339_RS00325 (ACB339_00325) - 50100..51440 (+) 1341 WP_002986685.1 hypothetical protein -
  ACB339_RS00330 (ACB339_00330) purB 51809..53101 (+) 1293 WP_011054098.1 adenylosuccinate lyase -
  ACB339_RS00335 (ACB339_00335) comR 53232..54143 (+) 912 WP_011054099.1 XRE family transcriptional regulator Regulator
  ACB339_RS00340 (ACB339_00340) comS 54234..54332 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  ACB339_RS00345 (ACB339_00345) ruvB 54363..55361 (+) 999 WP_011054100.1 Holliday junction branch migration DNA helicase RuvB -
  ACB339_RS00350 (ACB339_00350) - 55499..55936 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  ACB339_RS00355 (ACB339_00355) - 55959..56360 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  ACB339_RS00360 (ACB339_00360) - 56357..58132 (+) 1776 WP_011054101.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=1037995 ACB339_RS00340 WP_020833188.1 54234..54332(+) (comS) [Streptococcus pyogenes strain Isolate 3]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1037995 ACB339_RS00340 WP_020833188.1 54234..54332(+) (comS) [Streptococcus pyogenes strain Isolate 3]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment