Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACB359_RS05310 Genome accession   NZ_CP167013
Coordinates   1067918..1069723 (-) Length   601 a.a.
NCBI ID   WP_011054652.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 16     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1047678..1094757 1067918..1069723 within 0


Gene organization within MGE regions


Location: 1047678..1094757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB359_RS05230 (ACB359_05230) - 1047716..1048990 (-) 1275 WP_020837316.1 polysaccharide deacetylase family protein -
  ACB359_RS05235 (ACB359_05235) - 1049085..1050512 (-) 1428 WP_011284931.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  ACB359_RS05240 (ACB359_05240) ptsP 1050697..1052430 (-) 1734 WP_002984033.1 phosphoenolpyruvate--protein phosphotransferase -
  ACB359_RS05245 (ACB359_05245) - 1052435..1052698 (-) 264 WP_002984031.1 phosphocarrier protein HPr -
  ACB359_RS05250 (ACB359_05250) - 1053091..1053309 (+) 219 WP_002989242.1 redoxin NrdH -
  ACB359_RS05255 (ACB359_05255) nrdE 1053329..1055488 (+) 2160 WP_031488773.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  ACB359_RS05260 (ACB359_05260) nrdF 1055821..1056780 (+) 960 WP_002987365.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  ACB359_RS05265 (ACB359_05265) - 1056842..1058068 (+) 1227 WP_021340858.1 chloride channel protein -
  ACB359_RS05270 (ACB359_05270) - 1058164..1059321 (+) 1158 Protein_991 IS3 family transposase -
  ACB359_RS05275 (ACB359_05275) - 1059413..1060108 (-) 696 WP_031488553.1 CPBP family intramembrane glutamic endopeptidase -
  ACB359_RS05280 (ACB359_05280) - 1060127..1060888 (-) 762 WP_031488552.1 DUF3169 family protein -
  ACB359_RS05285 (ACB359_05285) - 1060885..1061100 (-) 216 WP_002989220.1 helix-turn-helix transcriptional regulator -
  ACB359_RS05290 (ACB359_05290) alaS 1061440..1064058 (-) 2619 WP_031488551.1 alanine--tRNA ligase -
  ACB359_RS05295 (ACB359_05295) prsA 1064445..1065500 (-) 1056 WP_002984003.1 peptidylprolyl isomerase PrsA -
  ACB359_RS05300 (ACB359_05300) - 1065563..1066270 (-) 708 WP_002984000.1 O-methyltransferase -
  ACB359_RS05305 (ACB359_05305) - 1066336..1067542 (-) 1207 Protein_998 OFA family MFS transporter -
  ACB359_RS05310 (ACB359_05310) pepF 1067918..1069723 (-) 1806 WP_011054652.1 oligoendopeptidase F Regulator
  ACB359_RS05315 (ACB359_05315) - 1069736..1070698 (-) 963 WP_031488550.1 competence protein CoiA -
  ACB359_RS05320 (ACB359_05320) - 1070994..1071710 (-) 717 WP_002995774.1 pseudouridine synthase -
  ACB359_RS05325 (ACB359_05325) nagB 1071829..1072533 (-) 705 WP_002995779.1 glucosamine-6-phosphate deaminase -
  ACB359_RS05330 (ACB359_05330) queA 1072735..1073763 (+) 1029 WP_031488549.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACB359_RS05335 (ACB359_05335) - 1073770..1074990 (+) 1221 WP_002983986.1 DUF3114 domain-containing protein -
  ACB359_RS05340 (ACB359_05340) - 1075144..1075734 (-) 591 WP_002983984.1 serine hydrolase -
  ACB359_RS05345 (ACB359_05345) - 1075731..1075958 (-) 228 WP_226316535.1 hypothetical protein -
  ACB359_RS05350 (ACB359_05350) - 1075959..1076192 (-) 234 WP_002983979.1 hypothetical protein -
  ACB359_RS05355 (ACB359_05355) sodA 1076359..1076964 (-) 606 WP_002983977.1 superoxide dismutase SodA -
  ACB359_RS05360 (ACB359_05360) holA 1077061..1078101 (-) 1041 WP_031488548.1 DNA polymerase III subunit delta -
  ACB359_RS05365 (ACB359_05365) - 1078172..1080415 (-) 2244 WP_031488547.1 DNA internalization-related competence protein ComEC/Rec2 -
  ACB359_RS05370 (ACB359_05370) - 1080396..1081058 (-) 663 WP_002983967.1 ComEA family DNA-binding protein -
  ACB359_RS05375 (ACB359_05375) - 1081258..1081998 (-) 741 WP_031488546.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ACB359_RS05380 (ACB359_05380) - 1082116..1082892 (+) 777 WP_010922438.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACB359_RS05385 (ACB359_05385) - 1082882..1083160 (+) 279 WP_011017953.1 GIY-YIG nuclease family protein -
  ACB359_RS05390 (ACB359_05390) - 1083184..1085184 (-) 2001 WP_371399853.1 KUP/HAK/KT family potassium transporter -
  ACB359_RS05395 (ACB359_05395) - 1085311..1086930 (-) 1620 WP_002989158.1 DEAD/DEAH box helicase -
  ACB359_RS05400 (ACB359_05400) - 1087237..1088781 (-) 1545 WP_031488544.1 peptide chain release factor 3 -
  ACB359_RS05405 (ACB359_05405) - 1089029..1089724 (-) 696 WP_031488543.1 TIGR02206 family membrane protein -
  ACB359_RS05410 (ACB359_05410) murF 1089804..1091195 (-) 1392 WP_031488542.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  ACB359_RS05415 (ACB359_05415) - 1091386..1092432 (-) 1047 WP_002989146.1 D-alanine--D-alanine ligase -
  ACB359_RS05420 (ACB359_05420) recR 1092533..1093129 (-) 597 WP_002983939.1 recombination mediator RecR -
  ACB359_RS05425 (ACB359_05425) - 1093176..1093367 (-) 192 WP_002983936.1 hypothetical protein -
  ACB359_RS05430 (ACB359_05430) - 1093926..1094705 (-) 780 WP_014407680.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69341.19 Da        Isoelectric Point: 4.7093

>NTDB_id=1037537 ACB359_RS05310 WP_011054652.1 1067918..1069723(-) (pepF) [Streptococcus pyogenes strain Isolate 16]
MTDNRSHLEEKYTWDLSTIFATDKDWEAEVSDLATEIDAAKDFSGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLAETPDLKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSIRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKKDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLAYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFDERLTELEVLVSKGIHKS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1037537 ACB359_RS05310 WP_011054652.1 1067918..1069723(-) (pepF) [Streptococcus pyogenes strain Isolate 16]
ATGACTGATAATCGCAGCCATTTAGAAGAAAAATACACTTGGGATTTGAGCACTATTTTTGCAACAGATAAGGATTGGGA
AGCTGAAGTCAGTGACTTAGCTACTGAAATTGACGCGGCTAAGGATTTTTCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTAGCTCGTCGTGTTGAGAAAGTCTATGTTTATGCTCACATGAAAAATGAC
CAAGACACTACTGTTGCCAAGTATCAAGAATACCAAGCTAAGGCTTCAGGCTTGTATGCAAAGTTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGCGGAAACACCTGATTTAAAAAGGT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTCAGCCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAACGGCGCTGAAGAAACCTTTAGTATTCTTGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTCATTAGCCTAATGGAATCTAAGGACCGTAGCATTCGCCAAGCTG
CTTATGAAGCCATGTATAGTACTTATGAACAGTTCCAACATACTTACGCTAAAACCTTGCAAACCAATGTGAAAGTGCAA
AACTATAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGATACCTTGTTAGAAACGGTTAATAAACATTTGCCACTCTTACACCGTTATTTGAAATTGCGTCAAGAGGTTCTTGGTT
TAGACGATTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGATTTAGCCATTGGTTATGATGAGGCTTTGGAA
AAGGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTACGCGGATCGTGTACATCGTGCTTTTACCGAACGTTGGATTGA
TGTTCACGTCAATAAAGGGAAGCGCTCTGGGGCTTATTCAGGTGGTTCCTATGATACCAATGCCTTCATGCTGTTGAACT
GGCAAGATACACTTGATAATCTTTACACACTTGTCCACGAAACAGGCCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGGGATTATAGTATCTTCTTGGCAGAAATTGCATCCACAACGAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAAGTGCAAGATGAGAAAGAACGCTTTGCCATTTTAAACCATTACCTCGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCCATTCATCAAGCTGATCAAAAAGGAGAAGTGTTAACAAGTGAATAC
CTTAACCAGCTATACGCTGATTTAAATGAAAAATATTATGGTTTAAGTAAAAAAGATAATCATTTTATTCAGTATGAATG
GGCACGTATTCCTCATTTCTATTACAATTATTATGTTTACCAATATGCAACAGGGTTTGCAGCTGCAAGCTATTTAGCGG
ATAAGATTGTGCATGGCACACAAGATGATATCGATCATTACTTGGCCTACCTCAAGTCAGGAAATTCTGATTACCCACTT
GAAGTGATTGCTAAAGCAGGCGTTGATATGGCAAAAGGTGATTATTTGGAAGCTGCCTTTAAAGTCTTTGACGAACGTCT
AACAGAACTTGAAGTACTCGTGTCCAAAGGCATACACAAAAGCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.215

100

0.712

Multiple sequence alignment