Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ200_RS19550 Genome accession   NZ_OX030728
Coordinates   4066862..4067338 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli isolate 68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4061862..4072338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ200_RS19520 (AI2959V1_3762) - 4062530..4063414 (+) 885 WP_000010408.1 GTPase -
  LQ200_RS19525 (AI2959V1_3764) - 4063617..4064297 (+) 681 WP_181261079.1 YafY family protein -
  LQ200_RS19530 (AI2959V1_3765) - 4064445..4065122 (+) 678 WP_001097301.1 hypothetical protein -
  LQ200_RS19535 (AI2959V1_3766) - 4065128..4065361 (+) 234 WP_001278287.1 DUF905 family protein -
  LQ200_RS19540 (AI2959V1_3767) - 4065451..4066269 (+) 819 WP_170881551.1 DUF932 domain-containing protein -
  LQ200_RS19545 (AI2959V1_3768) - 4066361..4066846 (+) 486 WP_000206664.1 antirestriction protein -
  LQ200_RS19550 (AI2959V1_3769) radC 4066862..4067338 (+) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  LQ200_RS19555 (AI2959V1_3770) - 4067425..4067646 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  LQ200_RS19560 (AI2959V1_3771) - 4067726..4068094 (+) 369 WP_001285575.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ200_RS19565 (AI2959V1_3772) - 4068184..4068561 (+) 378 WP_001094426.1 TA system toxin CbtA family protein -
  LQ200_RS19570 (AI2959V1_3773) - 4068558..4069046 (+) 489 WP_096950893.1 DUF5983 family protein -
  LQ200_RS19575 (AI2959V1_3774) - 4069058..4069255 (+) 198 WP_000839272.1 DUF957 domain-containing protein -
  LQ200_RS19580 (AI2959V1_3775) - 4069340..4069489 (+) 150 Protein_3839 hypothetical protein -
  LQ200_RS27700 - 4069459..4069593 (+) 135 Protein_3840 transcriptional regulator -
  LQ200_RS19585 (AI2959V1_3777) - 4069956..4071223 (+) 1268 Protein_3841 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=1037474 LQ200_RS19550 WP_001186725.1 4066862..4067338(+) (radC) [Escherichia coli isolate 68]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1037474 LQ200_RS19550 WP_001186725.1 4066862..4067338(+) (radC) [Escherichia coli isolate 68]
ATGCAGCAACTTTCCTTTCTGCCTGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGAGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAGGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment