Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LQ128_RS19890 Genome accession   NZ_OX030701
Coordinates   4126009..4126614 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 131     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4121009..4131614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ128_RS19860 (AI2951V1_3811) rsmS 4121711..4121875 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  LQ128_RS19865 (AI2951V1_3812) priC 4121889..4122416 (-) 528 WP_000844862.1 primosomal replication protein N'' -
  LQ128_RS19870 (AI2951V1_3813) ybaN 4122486..4122863 (+) 378 WP_001188900.1 DUF454 family protein -
  LQ128_RS19875 (AI2951V1_3814) apt 4123016..4123567 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  LQ128_RS19880 (AI2951V1_3815) dnaX 4123696..4125627 (+) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  LQ128_RS19885 (AI2951V1_3816) ybaB 4125680..4126009 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  LQ128_RS19890 (AI2951V1_3817) recR 4126009..4126614 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  LQ128_RS19895 (AI2951V1_3818) htpG 4126724..4128598 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  LQ128_RS19900 (AI2951V1_3819) adk 4128779..4129423 (+) 645 WP_001220233.1 adenylate kinase -
  LQ128_RS19905 (AI2951V1_3820) hemH 4129555..4130517 (+) 963 WP_001250114.1 ferrochelatase -
  LQ128_RS19910 (AI2951V1_3821) aes 4130514..4131473 (-) 960 WP_000801794.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1037396 LQ128_RS19890 WP_001195025.1 4126009..4126614(+) (recR) [Escherichia coli isolate 131]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1037396 LQ128_RS19890 WP_001195025.1 4126009..4126614(+) (recR) [Escherichia coli isolate 131]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443