Detailed information NTG1037342

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LQ128_RS07350
• Genome accession: NZ_OX030701
• Coordinates: 1507416..1508408 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 131
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1502416..1513408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ128_RS07330 (AI2951V1_1398)	ygbM	1503054..1503830 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
LQ128_RS07335 (AI2951V1_1399)	ygbN	1503919..1505283 (+)	1365	WP_000104433.1	GntP family transporter	-
LQ128_RS07340 (AI2951V1_1400)	-	1505426..1506469 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
LQ128_RS07345 (AI2951V1_1401)	-	1506694..1507245 (+)	552	WP_001179444.1	flavodoxin family protein	-
LQ128_RS07350 (AI2951V1_1402)	rpoS	1507416..1508408 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
LQ128_RS07355 (AI2951V1_1403)	nlpD	1508471..1509565 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
LQ128_RS07360 (AI2951V1_1404)	pcm	1509750..1510376 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
LQ128_RS07365 (AI2951V1_1405)	surE	1510370..1511131 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
LQ128_RS07370 (AI2951V1_1406)	truD	1511112..1512161 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
LQ128_RS07375 (AI2951V1_1407)	ispF	1512158..1512637 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LQ128_RS07380 (AI2951V1_1408)	ispD	1512637..1513347 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1037342 LQ128_RS07350 WP_000081550.1 1507416..1508408(-) (rpoS) [Escherichia coli isolate 131]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1037342 LQ128_RS07350 WP_000081550.1 1507416..1508408(-) (rpoS) [Escherichia coli isolate 131]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715