Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ159_RS20520 Genome accession   NZ_OW968124
Coordinates   4215562..4216038 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli isolate 10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4210562..4221038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ159_RS20480 (AI2853V1_3960) istA 4210669..4212210 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  LQ159_RS20485 - 4212804..4212980 (-) 177 Protein_4035 helix-turn-helix domain-containing protein -
  LQ159_RS25760 - 4213243..4213377 (-) 135 Protein_4036 transcriptional regulator -
  LQ159_RS20490 (AI2853V1_3963) - 4213347..4213496 (-) 150 Protein_4037 hypothetical protein -
  LQ159_RS20495 (AI2853V1_3964) - 4213602..4213778 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  LQ159_RS20500 (AI2853V1_3965) - 4213795..4214283 (-) 489 WP_000761690.1 DUF5983 family protein -
  LQ159_RS20505 (AI2853V1_3966) - 4214280..4214657 (-) 378 WP_000854759.1 TA system toxin CbtA family protein -
  LQ159_RS20510 (AI2853V1_3967) - 4214747..4215115 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ159_RS20515 (AI2853V1_3969) - 4215278..4215499 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  LQ159_RS20520 (AI2853V1_3970) radC 4215562..4216038 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  LQ159_RS20525 (AI2853V1_3971) - 4216054..4216527 (-) 474 WP_001350782.1 antirestriction protein -
  LQ159_RS20530 (AI2853V1_3972) - 4216869..4217687 (-) 819 WP_001234652.1 DUF932 domain-containing protein -
  LQ159_RS20535 (AI2853V1_3973) - 4217805..4218000 (-) 196 Protein_4046 DUF905 family protein -
  LQ159_RS20540 (AI2853V1_3974) - 4218071..4220917 (-) 2847 WP_053919348.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=1037136 LQ159_RS20520 WP_001186775.1 4215562..4216038(-) (radC) [Escherichia coli isolate 10]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1037136 LQ159_RS20520 WP_001186775.1 4215562..4216038(-) (radC) [Escherichia coli isolate 10]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment